Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc18l19
         (677 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC14C8.16c |bot1||mitochondrial ribosomal protein subunit S35 ...    29   0.82 
SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|ch...    27   1.9  
SPBC337.03 |||conserved eukaryotic protein|Schizosaccharomyces p...    27   3.3  
SPBC32H8.10 |cdk9||cyclin-dependent protein kinase Cdk9 |Schizos...    26   5.8  
SPAC1071.01c |pta1|SPAC4H3.15c|mRNA cleavage and polyadenylation...    26   5.8  
SPBC1709.02c |vas2|SPBC1734.18c|valine-tRNA ligase Vas2 |Schizos...    25   7.6  
SPCC777.08c |||HbrB family protein|Schizosaccharomyces pombe|chr...    25   7.6  

>SPBC14C8.16c |bot1||mitochondrial ribosomal protein subunit S35
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 315

 Score = 28.7 bits (61), Expect = 0.82
 Identities = 16/48 (33%), Positives = 25/48 (52%)
 Frame = -3

Query: 489 ASYFPSYKEIIEVAIKRLNKINPDLKSSPRAMLQHYNECLENLDNPVT 346
           A  F +  + IE  IK L +IN + +   + +L  YNE +E + N  T
Sbjct: 154 ARKFNTSPQRIEALIK-LRRINDEFEEKKKPILHSYNEVMEKMLNACT 200


>SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 867

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = -3

Query: 423 PDLKSSPRAMLQHYNECLENLDNPVTDEHH 334
           P+L++  R  L+H  EC+E   + V+ E H
Sbjct: 771 PELQNEARRGLEHIRECIEKRRDIVSREDH 800


>SPBC337.03 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 387

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 12/53 (22%), Positives = 31/53 (58%)
 Frame = -3

Query: 471 YKEIIEVAIKRLNKINPDLKSSPRAMLQHYNECLENLDNPVTDEHHLLTFGKE 313
           Y E+++   K+LNK +   K + +A ++  +  + +L++ + ++  LL+  +E
Sbjct: 186 YSELLDNYKKQLNKASESCKGNYQACIESRSTLITSLESLIEEQKKLLSEEEE 238


>SPBC32H8.10 |cdk9||cyclin-dependent protein kinase Cdk9
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 591

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = -3

Query: 630 FNEPTQKNYEYIKKLFLRTKYMDDS-IDYKDFNRRILLI 517
           F EP  K Y  +K+LF  TKY+ D  I ++D     LLI
Sbjct: 138 FTEPQIKCY--MKQLFAGTKYLHDQLILHRDLKAANLLI 174


>SPAC1071.01c |pta1|SPAC4H3.15c|mRNA cleavage and polyadenylation
           specificity factor complex subunit
           Pta1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 670

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 15/44 (34%), Positives = 20/44 (45%)
 Frame = -3

Query: 465 EIIEVAIKRLNKINPDLKSSPRAMLQHYNECLENLDNPVTDEHH 334
           E    A+ RL    P  + S  +     N  LEN+DN V D+ H
Sbjct: 471 EYFHGALSRLFDYAPQFERSIVSSSNLQNLTLENVDNTVWDKRH 514


>SPBC1709.02c |vas2|SPBC1734.18c|valine-tRNA ligase Vas2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 980

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -1

Query: 320 EKKLLQKYSSKRLNTVTPTLMPSAW 246
           EKK+LQ   S  L +  P  + SAW
Sbjct: 82  EKKVLQDLDSPALKSYNPKAVESAW 106


>SPCC777.08c |||HbrB family protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 422

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 9/22 (40%), Positives = 17/22 (77%)
 Frame = -1

Query: 650 KRPETGILMSQLKKTMNTLKNY 585
           K+P+ G+ +S L+KT+N  +N+
Sbjct: 137 KKPKDGLDLSALQKTLNGSRNF 158


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,554,801
Number of Sequences: 5004
Number of extensions: 49845
Number of successful extensions: 185
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 185
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)