Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc18l13
         (305 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB24D3.01 ||SPAPB2C8.02|transcription factor |Schizosaccharom...    25   3.3  
SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomy...    24   5.8  
SPBC4F6.18c |arf1||ADP-ribosylation factor Arf1|Schizosaccharomy...    24   5.8  

>SPAPB24D3.01 ||SPAPB2C8.02|transcription factor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 594

 Score = 24.6 bits (51), Expect = 3.3
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = +3

Query: 42  LSLIQWIKLIKYINYCIDGAEINLQTGIKMIVIFHFTFII 161
           LS    +  +  +N  ++GA I L T  + I +  F FII
Sbjct: 456 LSYCNTLIFLHRLNESVEGANICLDTARRAINVLKFFFII 495


>SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1583

 Score = 23.8 bits (49), Expect = 5.8
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +2

Query: 32   IFTLESNSVDQTHKVHKLLH 91
            I  LESN++ +T +V  LLH
Sbjct: 1344 IIALESNAIKETREVAILLH 1363


>SPBC4F6.18c |arf1||ADP-ribosylation factor Arf1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 180

 Score = 23.8 bits (49), Expect = 5.8
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = +2

Query: 5   HYXSLFKALIFTLESNSVDQTHKVHKLLHR 94
           HY    + +IF ++SN  ++  + H+ L R
Sbjct: 80  HYFQNTQGIIFVVDSNDRERISEAHEELQR 109


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 846,139
Number of Sequences: 5004
Number of extensions: 10128
Number of successful extensions: 26
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 77794588
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)