Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc18l13
         (305 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1108 + 34574299-34574446,34575000-34575070,34575246-345753...    27   3.8  
05_01_0475 - 3818121-3820565                                           26   6.7  
01_01_1097 + 8682250-8682337,8682406-8682474,8683014-8683222,868...    26   6.7  
11_01_0675 - 5508815-5511277                                           25   8.9  
04_03_0550 + 17054155-17054182,17054438-17054503,17054504-17056959     25   8.9  
03_05_0290 - 22791338-22791925,22792012-22793196,22793835-227939...    25   8.9  
01_06_1258 + 35806557-35806932,35807517-35807679,35807789-358078...    25   8.9  

>01_06_1108 +
           34574299-34574446,34575000-34575070,34575246-34575365,
           34575471-34575488,34575708-34575826,34576244-34576325,
           34576537-34576542
          Length = 187

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 12/43 (27%), Positives = 23/43 (53%)
 Frame = +2

Query: 5   HYXSLFKALIFTLESNSVDQTHKVHKLLHRWR*NQFADWHQND 133
           HY    + LIF ++SN  ++  +    LHR   N+  +W +++
Sbjct: 80  HYFQNTQGLIFVVDSNDRERVVEARDELHRML-NELQNWKKDE 121


>05_01_0475 - 3818121-3820565
          Length = 814

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +3

Query: 42  LSLIQWIKLIKYINYCIDGAE 104
           + LIQ I L+K I +C +G E
Sbjct: 558 IGLIQHINLVKLIGFCCEGDE 578


>01_01_1097 +
           8682250-8682337,8682406-8682474,8683014-8683222,
           8683468-8683657,8684619-8685010,8685610-8686098
          Length = 478

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +3

Query: 36  LRLSLIQWIKLIKYINYCIDG 98
           L LSL+    L+K   YC+DG
Sbjct: 145 LMLSLLHHPNLVKLFGYCVDG 165


>11_01_0675 - 5508815-5511277
          Length = 820

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +3

Query: 42  LSLIQWIKLIKYINYCIDG 98
           L LIQ I L+K I +C +G
Sbjct: 572 LGLIQHINLVKLIGFCCEG 590


>04_03_0550 + 17054155-17054182,17054438-17054503,17054504-17056959
          Length = 849

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +3

Query: 42  LSLIQWIKLIKYINYCIDG 98
           + +IQ I L+K I YC +G
Sbjct: 598 IGIIQHINLVKLIGYCCEG 616


>03_05_0290 -
           22791338-22791925,22792012-22793196,22793835-22793904,
           22795918-22795979
          Length = 634

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = +3

Query: 45  SLIQWIKLIKYINYCID 95
           SL+ W + +K IN+CID
Sbjct: 149 SLLPWSENLKVINHCID 165


>01_06_1258 +
           35806557-35806932,35807517-35807679,35807789-35807837,
           35807943-35808866,35808954-35809049,35809142-35809257,
           35809345-35809447,35809570-35809658,35809750-35809900,
           35809995-35810141,35810238-35810366,35810451-35810529,
           35810616-35810725
          Length = 843

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +3

Query: 117 TGIKMIVIFHFTFIILPHSLQ 179
           TGI MI+I  F+F +  HS +
Sbjct: 434 TGILMIIIMSFSFTLATHSFR 454


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,988,204
Number of Sequences: 37544
Number of extensions: 52597
Number of successful extensions: 158
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 363831720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)