Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc18l12
         (728 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132902-1|CAB81996.1|  246|Caenorhabditis elegans Hypothetical ...   248   4e-66
AL023847-1|CAA19545.1|  364|Caenorhabditis elegans Hypothetical ...    30   1.5  
U41995-2|AAA83460.1|  317|Caenorhabditis elegans Serpentine rece...    28   7.9  

>AL132902-1|CAB81996.1|  246|Caenorhabditis elegans Hypothetical
           protein Y71A12B.1 protein.
          Length = 246

 Score =  248 bits (606), Expect = 4e-66
 Identities = 125/211 (59%), Positives = 148/211 (70%)
 Frame = -3

Query: 723 QKLXEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQGFPMKQGVLTNSR 544
           QK  EV +E KLR+F+EKRM  EV  D LGDEWKGYV+R+ GGNDKQGFPMKQG+LTN R
Sbjct: 13  QKSFEVDEEKKLRLFFEKRMSQEVAIDALGDEWKGYVVRIGGGNDKQGFPMKQGILTNGR 72

Query: 543 VRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQEIPGLTDGNVPRR 364
           VRLL+ KG SCYR R++GERKRKSVRGCIVDAN+S L+LVIV+KG  EI GLTD  +PR+
Sbjct: 73  VRLLLKKGQSCYRERKNGERKRKSVRGCIVDANMSALSLVIVKKGDGEIEGLTDSVLPRK 132

Query: 363 LGPKRASKIRKLFNLSKEDDVRRYVVKRVLPAKEGKENAKPRHKAPKIQRLVTPVVLQXX 184
           LGPKRASKIRKLFNL+K DDV +YV+       +G      +  APKIQRL+TP  +   
Sbjct: 133 LGPKRASKIRKLFNLTKHDDVTKYVITHDKTFPDG----VTKTIAPKIQRLITPARIARK 188

Query: 183 XXXXXXXXXXXXXXKSSEAEYAKLLAQRKKE 91
                         +   A Y KLLA+  KE
Sbjct: 189 KYLLRQKRNQKIKMRDDAAAYHKLLAKYSKE 219


>AL023847-1|CAA19545.1|  364|Caenorhabditis elegans Hypothetical
           protein Y57A10C.3 protein.
          Length = 364

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 14/47 (29%), Positives = 26/47 (55%)
 Frame = +1

Query: 52  APAFDLFLATHLGFLLSLCKQFSIFSLRGLALSETLLLQSETMTSTL 192
           AP F ++    +G L+++C Q SIFS+  L + +  +L ++     L
Sbjct: 69  APFFGIWFELIIGKLITMCYQLSIFSIGNLEIRKFYVLWTDDSNKML 115


>U41995-2|AAA83460.1|  317|Caenorhabditis elegans Serpentine
           receptor, class x protein46 protein.
          Length = 317

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 16/63 (25%), Positives = 27/63 (42%), Gaps = 1/63 (1%)
 Frame = +1

Query: 235 MSGFSVFFSFLSWEHAFDDITTYIIFFAKVEQLTDFGSTFGT*TAGYISISQSRNF-LGT 411
           +S F+  F +++W  AF D       F  V  +  F        + YIS+S    + +  
Sbjct: 33  VSSFNKSFGYITWNQAFGDALQSTTVFTLVVPMVFFDLEVLKANSNYISLSMLLGYDISV 92

Query: 412 LAH 420
           L+H
Sbjct: 93  LSH 95


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,812,078
Number of Sequences: 27780
Number of extensions: 322933
Number of successful extensions: 875
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 843
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 874
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1718929214
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)