Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc18l04
         (830 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC25H2.05 |egd2|nac1|nascent polypeptide-associated complex al...    54   2e-08
SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual      29   0.61 
SPAC29B12.11c |||human WW domain binding protein-2 ortholog|Schi...    27   3.3  
SPBC24C6.10c |||conserved eukaryotic protein|Schizosaccharomyces...    26   7.5  
SPCC1322.03 |||TRP-like ion channel|Schizosaccharomyces pombe|ch...    26   7.5  
SPBP19A11.04c |mor2|cps12|morphogenesis protein Mor2|Schizosacch...    25   10.0 

>SPBC25H2.05 |egd2|nac1|nascent polypeptide-associated complex alpha
           subunit Egd2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 173

 Score = 54.4 bits (125), Expect = 2e-08
 Identities = 26/33 (78%), Positives = 29/33 (87%)
 Frame = -2

Query: 751 IVMSQANVSRAKAVRALKNNQSDIVNAIMELTM 653
           +VM+QANVSRAKAV ALK N SD+VNAIM LTM
Sbjct: 141 LVMAQANVSRAKAVTALKENNSDVVNAIMSLTM 173


>SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 188

 Score = 29.5 bits (63), Expect = 0.61
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +1

Query: 139 FYCYYFYKLYISIVSFLYMILSFQLLYAVGLH 234
           F+C++FY    S  SFL+  L F   + +  H
Sbjct: 107 FFCFFFYFSLFSFFSFLFTSLHFNFFFRLCRH 138


>SPAC29B12.11c |||human WW domain binding protein-2
           ortholog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 174

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 11/40 (27%), Positives = 21/40 (52%)
 Frame = +3

Query: 162 IVHKYCIFSLYDSIFPIIVCCWPSPIKTTSTTKGAYLVVN 281
           ++   C+F  +D +  I + C P  +K+ + TKG   + N
Sbjct: 18  LLENECMFDCFDGV-AISILCKPPSLKSWTCTKGLLCLTN 56


>SPBC24C6.10c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 374

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
 Frame = +1

Query: 31  YTLTEAYFGFQHEGRTSLFLNAYFTYIMSDISILSIFY-CYYFYK 162
           Y +TE    FQ +     FLN+   Y + + ++LSIFY C++F K
Sbjct: 51  YLITE----FQLQRCMEKFLNSPL-YQLDENAVLSIFYDCFFFLK 90


>SPCC1322.03 |||TRP-like ion channel|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 862

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 13/31 (41%), Positives = 21/31 (67%), Gaps = 2/31 (6%)
 Frame = +1

Query: 148 YYFYKL--YISIVSFLYMILSFQLLYAVGLH 234
           YYFY +  Y+ +VS  Y  +SF ++YA+ L+
Sbjct: 182 YYFYPVISYLVVVSLAY--VSFSIIYALFLN 210


>SPBP19A11.04c |mor2|cps12|morphogenesis protein
            Mor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2196

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = +1

Query: 130  LSIFYCYYFYKLYISIVSFLYMILSFQLLY 219
            +S  Y YYF    + IVS L M LS  L +
Sbjct: 1817 VSYLYSYYFEDYELEIVSTLTMFLSNNLTW 1846


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,958,722
Number of Sequences: 5004
Number of extensions: 57641
Number of successful extensions: 162
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 408446760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)