Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc18l04
         (830 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0148 + 1174097-1174289,1174539-1174672,1174760-1175098           48   1e-05
01_07_0123 + 41206782-41206844,41207701-41207782,41208587-412087...    43   3e-04
07_03_1022 - 23353054-23353263,23353399-23353505,23354613-23354961     29   4.5  

>03_01_0148 + 1174097-1174289,1174539-1174672,1174760-1175098
          Length = 221

 Score = 47.6 bits (108), Expect = 1e-05
 Identities = 23/32 (71%), Positives = 29/32 (90%)
 Frame = -2

Query: 751 IVMSQANVSRAKAVRALKNNQSDIVNAIMELT 656
           +VM+QA+VSRAKAV+ALK +  DIV+AIMELT
Sbjct: 189 LVMTQASVSRAKAVKALKAHDGDIVSAIMELT 220


>01_07_0123 +
           41206782-41206844,41207701-41207782,41208587-41208717,
           41208758-41209147
          Length = 221

 Score = 43.2 bits (97), Expect = 3e-04
 Identities = 21/32 (65%), Positives = 26/32 (81%)
 Frame = -2

Query: 751 IVMSQANVSRAKAVRALKNNQSDIVNAIMELT 656
           +VM+QA VSR++AV+ALK    DIV AIMELT
Sbjct: 189 LVMTQATVSRSRAVKALKAANGDIVTAIMELT 220


>07_03_1022 - 23353054-23353263,23353399-23353505,23354613-23354961
          Length = 221

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
 Frame = +3

Query: 198 SIFPIIVCCWPSPIKTTSTTKGAYLV-VNALSYPSFIG*KKVHISTN 335
           ++FP   CC PSP +   +T+   LV V  L++P+ +    +H+  N
Sbjct: 18  AVFPSARCCLPSPHRFLPSTRRKRLVTVAKLAFPAELKAHTLHLVDN 64


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,503,095
Number of Sequences: 37544
Number of extensions: 309240
Number of successful extensions: 660
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 650
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 660
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2291695380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)