Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc18l04
         (830 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024847-3|AAF60854.1|  195|Caenorhabditis elegans Hypothetical ...    47   2e-05
AC024847-2|AAO21415.1|  197|Caenorhabditis elegans Hypothetical ...    47   2e-05
Z49909-3|CAA90107.2|  603|Caenorhabditis elegans Hypothetical pr...    29   5.4  

>AC024847-3|AAF60854.1|  195|Caenorhabditis elegans Hypothetical
           protein Y65B4BR.5a protein.
          Length = 195

 Score = 46.8 bits (106), Expect = 2e-05
 Identities = 22/33 (66%), Positives = 27/33 (81%)
 Frame = -2

Query: 751 IVMSQANVSRAKAVRALKNNQSDIVNAIMELTM 653
           +V+SQAN +R KA+RALK   +DIVNAIM LTM
Sbjct: 163 LVISQANTTRNKAIRALKEADNDIVNAIMSLTM 195


>AC024847-2|AAO21415.1|  197|Caenorhabditis elegans Hypothetical
           protein Y65B4BR.5b protein.
          Length = 197

 Score = 46.8 bits (106), Expect = 2e-05
 Identities = 22/33 (66%), Positives = 27/33 (81%)
 Frame = -2

Query: 751 IVMSQANVSRAKAVRALKNNQSDIVNAIMELTM 653
           +V+SQAN +R KA+RALK   +DIVNAIM LTM
Sbjct: 165 LVISQANTTRNKAIRALKEADNDIVNAIMSLTM 197


>Z49909-3|CAA90107.2|  603|Caenorhabditis elegans Hypothetical
           protein C14A4.3 protein.
          Length = 603

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = +2

Query: 398 AYINENKTLAYTCIHY*KEM-WPNQITLNLQIVQTLLMI 511
           AY+NEN T    C+ +   + WP    L L IV  +L++
Sbjct: 201 AYLNENWTAGIFCVAFSTMVGWPFSAVLGLPIVADMLLL 239


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,163,661
Number of Sequences: 27780
Number of extensions: 316489
Number of successful extensions: 798
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 769
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 798
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2061488408
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)