Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc18l02
         (189 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68341-3|CAA92766.2|  269|Caenorhabditis elegans Hypothetical pr...    30   0.20 
Z92779-4|CAE11294.1| 1816|Caenorhabditis elegans Hypothetical pr...    25   5.6  
Z92779-3|CAD90173.2| 2155|Caenorhabditis elegans Hypothetical pr...    25   5.6  
Z92779-2|CAD56561.2| 1475|Caenorhabditis elegans Hypothetical pr...    25   5.6  
Z92779-1|CAB07173.1| 1813|Caenorhabditis elegans Hypothetical pr...    25   5.6  
Z79694-11|CAE11299.1| 1816|Caenorhabditis elegans Hypothetical p...    25   5.6  
Z79694-10|CAD90170.2| 2155|Caenorhabditis elegans Hypothetical p...    25   5.6  
Z79694-9|CAB01966.1| 1813|Caenorhabditis elegans Hypothetical pr...    25   5.6  
Z73912-7|CAE11317.1| 1816|Caenorhabditis elegans Hypothetical pr...    25   5.6  
Z73912-6|CAD90190.2| 2155|Caenorhabditis elegans Hypothetical pr...    25   5.6  
Z73912-5|CAD56619.2| 1475|Caenorhabditis elegans Hypothetical pr...    25   5.6  
Z73912-4|CAA98147.1| 1813|Caenorhabditis elegans Hypothetical pr...    25   5.6  
M62830-1|AAA93094.1| 1815|Caenorhabditis elegans UNC-13 protein.       25   5.6  
Z81091-2|CAB03143.2| 2972|Caenorhabditis elegans Hypothetical pr...    25   7.5  
Z75536-4|CAA99832.3| 2271|Caenorhabditis elegans Hypothetical pr...    25   9.9  
Z75536-3|CAA99831.3| 2279|Caenorhabditis elegans Hypothetical pr...    25   9.9  
AF372457-1|AAK54248.1| 2279|Caenorhabditis elegans endocytosis p...    25   9.9  
AF025470-3|AAB71057.1|  394|Caenorhabditis elegans Hypothetical ...    25   9.9  

>Z68341-3|CAA92766.2|  269|Caenorhabditis elegans Hypothetical
           protein F01G4.5 protein.
          Length = 269

 Score = 30.3 bits (65), Expect = 0.20
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = -3

Query: 145 MCFDFSSIYFTFINNVSYYD*KHCVNCGFTLT 50
           M +DFS I+F   N    Y  K C  C +TLT
Sbjct: 131 MVYDFSQIFFLHFNCFDAYATKLCYLCYYTLT 162


>Z92779-4|CAE11294.1| 1816|Caenorhabditis elegans Hypothetical protein
            ZK524.2e protein.
          Length = 1816

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = -3

Query: 184  HFACCLLCLRTKWMCFDFSSIYFTFINNVSYY 89
            HFAC  LC  T++MC    ++  T + N++ Y
Sbjct: 1019 HFAC--LC--TRYMCAGVPAVLSTLLANINAY 1046


>Z92779-3|CAD90173.2| 2155|Caenorhabditis elegans Hypothetical protein
            ZK524.2d protein.
          Length = 2155

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = -3

Query: 184  HFACCLLCLRTKWMCFDFSSIYFTFINNVSYY 89
            HFAC  LC  T++MC    ++  T + N++ Y
Sbjct: 1358 HFAC--LC--TRYMCAGVPAVLSTLLANINAY 1385


>Z92779-2|CAD56561.2| 1475|Caenorhabditis elegans Hypothetical
           protein ZK524.2c protein.
          Length = 1475

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = -3

Query: 184 HFACCLLCLRTKWMCFDFSSIYFTFINNVSYY 89
           HFAC  LC  T++MC    ++  T + N++ Y
Sbjct: 678 HFAC--LC--TRYMCAGVPAVLSTLLANINAY 705


>Z92779-1|CAB07173.1| 1813|Caenorhabditis elegans Hypothetical protein
            ZK524.2a protein.
          Length = 1813

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = -3

Query: 184  HFACCLLCLRTKWMCFDFSSIYFTFINNVSYY 89
            HFAC  LC  T++MC    ++  T + N++ Y
Sbjct: 1016 HFAC--LC--TRYMCAGVPAVLSTLLANINAY 1043


>Z79694-11|CAE11299.1| 1816|Caenorhabditis elegans Hypothetical
            protein ZK524.2e protein.
          Length = 1816

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = -3

Query: 184  HFACCLLCLRTKWMCFDFSSIYFTFINNVSYY 89
            HFAC  LC  T++MC    ++  T + N++ Y
Sbjct: 1019 HFAC--LC--TRYMCAGVPAVLSTLLANINAY 1046


>Z79694-10|CAD90170.2| 2155|Caenorhabditis elegans Hypothetical
            protein ZK524.2d protein.
          Length = 2155

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = -3

Query: 184  HFACCLLCLRTKWMCFDFSSIYFTFINNVSYY 89
            HFAC  LC  T++MC    ++  T + N++ Y
Sbjct: 1358 HFAC--LC--TRYMCAGVPAVLSTLLANINAY 1385


>Z79694-9|CAB01966.1| 1813|Caenorhabditis elegans Hypothetical protein
            ZK524.2a protein.
          Length = 1813

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = -3

Query: 184  HFACCLLCLRTKWMCFDFSSIYFTFINNVSYY 89
            HFAC  LC  T++MC    ++  T + N++ Y
Sbjct: 1016 HFAC--LC--TRYMCAGVPAVLSTLLANINAY 1043


>Z73912-7|CAE11317.1| 1816|Caenorhabditis elegans Hypothetical protein
            ZK524.2e protein.
          Length = 1816

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = -3

Query: 184  HFACCLLCLRTKWMCFDFSSIYFTFINNVSYY 89
            HFAC  LC  T++MC    ++  T + N++ Y
Sbjct: 1019 HFAC--LC--TRYMCAGVPAVLSTLLANINAY 1046


>Z73912-6|CAD90190.2| 2155|Caenorhabditis elegans Hypothetical protein
            ZK524.2d protein.
          Length = 2155

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = -3

Query: 184  HFACCLLCLRTKWMCFDFSSIYFTFINNVSYY 89
            HFAC  LC  T++MC    ++  T + N++ Y
Sbjct: 1358 HFAC--LC--TRYMCAGVPAVLSTLLANINAY 1385


>Z73912-5|CAD56619.2| 1475|Caenorhabditis elegans Hypothetical
           protein ZK524.2c protein.
          Length = 1475

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = -3

Query: 184 HFACCLLCLRTKWMCFDFSSIYFTFINNVSYY 89
           HFAC  LC  T++MC    ++  T + N++ Y
Sbjct: 678 HFAC--LC--TRYMCAGVPAVLSTLLANINAY 705


>Z73912-4|CAA98147.1| 1813|Caenorhabditis elegans Hypothetical protein
            ZK524.2a protein.
          Length = 1813

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = -3

Query: 184  HFACCLLCLRTKWMCFDFSSIYFTFINNVSYY 89
            HFAC  LC  T++MC    ++  T + N++ Y
Sbjct: 1016 HFAC--LC--TRYMCAGVPAVLSTLLANINAY 1043


>M62830-1|AAA93094.1| 1815|Caenorhabditis elegans UNC-13 protein.
          Length = 1815

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = -3

Query: 184  HFACCLLCLRTKWMCFDFSSIYFTFINNVSYY 89
            HFAC  LC  T++MC    ++  T + N++ Y
Sbjct: 1019 HFAC--LC--TRYMCAGVPAVLSTLLANINAY 1046


>Z81091-2|CAB03143.2| 2972|Caenorhabditis elegans Hypothetical protein
            F55H12.3 protein.
          Length = 2972

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -3

Query: 82   KHCVNCGFTLTEI*XPCICSP 20
            + C+ CGF L+    PCI  P
Sbjct: 2655 RKCICCGFDLSTFGGPCIQCP 2675


>Z75536-4|CAA99832.3| 2271|Caenorhabditis elegans Hypothetical protein
            F18C12.2b protein.
          Length = 2271

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -2

Query: 71   ELWFYPDRDLKXVYMLSF 18
            E W+Y D+D K V  LSF
Sbjct: 981  EEWYYHDKDAKQVGPLSF 998


>Z75536-3|CAA99831.3| 2279|Caenorhabditis elegans Hypothetical protein
            F18C12.2a protein.
          Length = 2279

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -2

Query: 71   ELWFYPDRDLKXVYMLSF 18
            E W+Y D+D K V  LSF
Sbjct: 981  EEWYYHDKDAKQVGPLSF 998


>AF372457-1|AAK54248.1| 2279|Caenorhabditis elegans endocytosis
            protein RME-8 protein.
          Length = 2279

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -2

Query: 71   ELWFYPDRDLKXVYMLSF 18
            E W+Y D+D K V  LSF
Sbjct: 981  EEWYYHDKDAKQVGPLSF 998


>AF025470-3|AAB71057.1|  394|Caenorhabditis elegans Hypothetical
           protein W10D9.3 protein.
          Length = 394

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 9/23 (39%), Positives = 11/23 (47%)
 Frame = -3

Query: 160 LRTKWMCFDFSSIYFTFINNVSY 92
           +   W CFDF   Y  F N  +Y
Sbjct: 152 MENDWNCFDFVMEYMKFTNYRNY 174


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,673,493
Number of Sequences: 27780
Number of extensions: 50883
Number of successful extensions: 140
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 12,740,198
effective HSP length: 42
effective length of database: 11,573,438
effective search space used: 231468760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)