Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc18l02
         (189 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    19   4.1  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    19   5.4  
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    18   9.5  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               18   9.5  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    18   9.5  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    18   9.5  

>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 19.4 bits (38), Expect = 4.1
 Identities = 6/12 (50%), Positives = 8/12 (66%)
 Frame = -3

Query: 121 YFTFINNVSYYD 86
           Y  F+N  +YYD
Sbjct: 134 YSAFVNLTAYYD 145


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 19.0 bits (37), Expect = 5.4
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = +1

Query: 7   LKIAKESIYTXFKSRSG*NHNSHNVFSRSMKR 102
           L +AK+       S S  N+NS N  + S  R
Sbjct: 521 LAVAKQQNQVPLTSSSNVNNNSGNGNTNSSAR 552


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 18.2 bits (35), Expect = 9.5
 Identities = 6/12 (50%), Positives = 8/12 (66%)
 Frame = -3

Query: 37  PCICSPLLFLDD 2
           P IC  + FLD+
Sbjct: 226 PYICEDMRFLDE 237


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 18.2 bits (35), Expect = 9.5
 Identities = 7/27 (25%), Positives = 15/27 (55%)
 Frame = +2

Query: 107 DKSKINRRKIKTHPFCTQAQQAASEVF 187
           D + + ++K K +P   Q+   + EV+
Sbjct: 131 DIAGLRKKKHKVNPLLMQSGMGSWEVY 157


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 18.2 bits (35), Expect = 9.5
 Identities = 6/12 (50%), Positives = 8/12 (66%)
 Frame = -3

Query: 37  PCICSPLLFLDD 2
           P IC  + FLD+
Sbjct: 226 PYICEDMRFLDE 237


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 18.2 bits (35), Expect = 9.5
 Identities = 6/10 (60%), Positives = 8/10 (80%)
 Frame = +1

Query: 61  NHNSHNVFSR 90
           NH++H V SR
Sbjct: 352 NHDNHRVASR 361


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 43,255
Number of Sequences: 438
Number of extensions: 495
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 42
effective length of database: 127,947
effective search space used:  2558940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)