Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc18l01
         (855 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ...    29   0.84 
SPAC23C4.19 |spt5||transcription elongation factor Spt5|Schizosa...    27   4.5  
SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    26   7.8  

>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 2344

 Score = 29.1 bits (62), Expect = 0.84
 Identities = 17/44 (38%), Positives = 23/44 (52%)
 Frame = -2

Query: 821 RRSSLLATPHSSYLLSLCNGPT*LSARPAVTRSFTRACATGPST 690
           R++SLL + HSSY   L   PT LS   ++ R +       PST
Sbjct: 490 RKTSLLGSNHSSYSDKL-GSPTILSTSFSLARPYPEPALVSPST 532


>SPAC23C4.19 |spt5||transcription elongation factor
           Spt5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 990

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +1

Query: 274 TSDRQTALGWTVRVARGPMR 333
           T  R  A+G TVR+ RGPM+
Sbjct: 723 TIGRDKAIGATVRIRRGPMK 742


>SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 682

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 21/59 (35%), Positives = 26/59 (44%), Gaps = 4/59 (6%)
 Frame = -2

Query: 842 NGPTVTARRSSLLATPHSSYLLSLC----NGPT*LSARPAVTRSFTRACATGPSTLVSY 678
           NGPT          TPHS++L S      +GPT   + P  T S + A A G S    Y
Sbjct: 359 NGPTAVNGLPMNSYTPHSNHLHSPSPNSNSGPTDSLSAPNSTSSPSMAHANGASFASQY 417


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,298,972
Number of Sequences: 5004
Number of extensions: 63139
Number of successful extensions: 180
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 180
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 424464280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)