Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc18l01
         (855 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1290 - 25927667-25928950                                         31   1.2  
10_08_0886 + 21307977-21308007,21308113-21308240                       29   4.7  
10_06_0028 - 9802362-9802475,9802919-9803090,9803167-9803208,980...    29   4.7  
01_03_0208 + 13797780-13797931,13798234-13798288,13798807-13799943     29   4.7  
05_07_0305 - 29097478-29097598,29097766-29097866,29098136-290982...    29   6.2  
02_05_0237 + 27095817-27097433                                         29   6.2  
01_01_1006 - 7972645-7973811                                           28   8.3  

>08_02_1290 - 25927667-25928950
          Length = 427

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 17/41 (41%), Positives = 22/41 (53%)
 Frame = +2

Query: 236 APRPLGHVAQQKELVTDRRRSAGPCGSRADRCGDKR*EAYT 358
           APR +G +A   +LV  RR  A P G+R D  G  R +  T
Sbjct: 384 APRQVGAIAGGAQLVGQRRGRAAPTGARDDDDGGVRLQKQT 424


>10_08_0886 + 21307977-21308007,21308113-21308240
          Length = 52

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = +1

Query: 505 EPAAGVAAQVEAPDLVVDEDGQHERNGGQPPHELEWV 615
           +PAA  A Q E        DG HER  G  P + +W+
Sbjct: 8   KPAAVAAPQRERGGRGAAADGVHEREAGDRPAKAQWM 44


>10_06_0028 -
           9802362-9802475,9802919-9803090,9803167-9803208,
           9803344-9804011,9804098-9804418,9804495-9804833,
           9804856-9805109,9805300-9805510
          Length = 706

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 15/35 (42%), Positives = 18/35 (51%)
 Frame = -1

Query: 318 RDPHGPAERRLSVTSSFCCAT*PRGRGALSHHTIP 214
           R  H P +RR S TS+   A  P G  A+ H T P
Sbjct: 343 RVEHNPTQRRSSCTSTEAPAEQPEGPAAVDHITEP 377


>01_03_0208 + 13797780-13797931,13798234-13798288,13798807-13799943
          Length = 447

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 13/26 (50%), Positives = 18/26 (69%)
 Frame = -1

Query: 612 PLKFVWWLPAIPFMLSIFIYDEIRRF 535
           PLK   WL +IP++LS F++  IR F
Sbjct: 314 PLKEAAWLVSIPWILSFFVWLFIRLF 339


>05_07_0305 -
           29097478-29097598,29097766-29097866,29098136-29098288,
           29098404-29098542,29098649-29098719,29099022-29099333,
           29099605-29099903,29100011-29100271,29100365-29100471,
           29100588-29100739,29100816-29100970,29102946-29103141,
           29103340-29103468,29103540-29103641,29103736-29103889,
           29103970-29104058
          Length = 846

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 19/55 (34%), Positives = 26/55 (47%)
 Frame = -1

Query: 855 SYGQEWTYRDRKALEFTCHTAFFVSIVVVQWADLIICKTRRNSIIHQGMRNWALN 691
           +Y +  +  D+  + +T     FVS V  QW DL    +RRN   H GM    LN
Sbjct: 479 AYSRSCSTEDKPMMNWTKLVKAFVS-VKFQWPDLKDTVSRRNVCEHCGMSRDFLN 532


>02_05_0237 + 27095817-27097433
          Length = 538

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = -1

Query: 822 KALEFTCHTAFFVSIVVVQWADLIICKTRRNSIIHQ 715
           KA E   + A+FVS  V      ++C+  RN + HQ
Sbjct: 501 KAFETAYNNAWFVSFFVAGAVYCLLCRRNRNELKHQ 536


>01_01_1006 - 7972645-7973811
          Length = 388

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = -1

Query: 726 IIHQGMRNWA-LNFGLIFETALAAFLSYTPGMDKGLRMYPL 607
           ++HQ M  W  L++GL+ + A        PG+   LR  PL
Sbjct: 204 VVHQMMIWWVDLSYGLLADLAFDQLRRVVPGIHHDLRFIPL 244


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,526,520
Number of Sequences: 37544
Number of extensions: 505179
Number of successful extensions: 1503
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1464
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1503
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2385713652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)