Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc18l01
(855 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81028-2|CAB02694.1| 996|Caenorhabditis elegans Hypothetical pr... 210 1e-54
U18546-1|AAB02615.1| 996|Caenorhabditis elegans Na,K-ATPase alp... 210 1e-54
Z93378-6|CAB07586.1| 1049|Caenorhabditis elegans Hypothetical pr... 126 3e-29
Z81457-11|CAB03818.1| 1049|Caenorhabditis elegans Hypothetical p... 126 3e-29
AF016433-4|AAB65385.2| 1054|Caenorhabditis elegans Hypothetical ... 52 4e-07
AF016446-10|AAC24161.1| 1050|Caenorhabditis elegans Hypothetical... 52 7e-07
AM419898-1|CAL99238.1| 1121|Caenorhabditis elegans cation transp... 43 2e-04
AL132876-34|CAD21662.2| 1121|Caenorhabditis elegans Hypothetical... 43 2e-04
AF016433-5|AAN84877.1| 1039|Caenorhabditis elegans Hypothetical ... 36 0.028
Z78420-6|CAB01711.2| 1243|Caenorhabditis elegans Hypothetical pr... 31 1.4
Z78418-6|CAB01699.2| 1243|Caenorhabditis elegans Hypothetical pr... 31 1.4
Z78540-1|CAB01736.1| 409|Caenorhabditis elegans Hypothetical pr... 30 1.8
>Z81028-2|CAB02694.1| 996|Caenorhabditis elegans Hypothetical protein
B0365.3 protein.
Length = 996
Score = 210 bits (512), Expect = 1e-54
Identities = 89/123 (72%), Positives = 104/123 (84%)
Frame = -1
Query: 855 SYGQEWTYRDRKALEFTCHTAFFVSIVVVQWADLIICKTRRNSIIHQGMRNWALNFGLIF 676
SYGQEWTY +RK LE+TC TA+FVSIVVVQWADLII KTRRNS++ QGM NW LNFGL+F
Sbjct: 874 SYGQEWTYANRKILEYTCQTAYFVSIVVVQWADLIISKTRRNSLVQQGMSNWTLNFGLVF 933
Query: 675 ETALAAFLSYTPGMDKGLRMYPLKFVWWLPAIPFMLSIFIYDEIRRFYLRRNPGGWLEQE 496
ETALA F+ Y PG+D GLRMY L+F WW A+PF + IF+YDEIRRF +RR PGGW+E+E
Sbjct: 934 ETALAWFMCYCPGLDNGLRMYGLRFSWWFCALPFSILIFVYDEIRRFLIRRYPGGWVERE 993
Query: 495 TYY 487
TYY
Sbjct: 994 TYY 996
>U18546-1|AAB02615.1| 996|Caenorhabditis elegans Na,K-ATPase alpha
subunit protein.
Length = 996
Score = 210 bits (512), Expect = 1e-54
Identities = 89/123 (72%), Positives = 104/123 (84%)
Frame = -1
Query: 855 SYGQEWTYRDRKALEFTCHTAFFVSIVVVQWADLIICKTRRNSIIHQGMRNWALNFGLIF 676
SYGQEWTY +RK LE+TC TA+FVSIVVVQWADLII KTRRNS++ QGM NW LNFGL+F
Sbjct: 874 SYGQEWTYANRKILEYTCQTAYFVSIVVVQWADLIISKTRRNSLVQQGMSNWTLNFGLVF 933
Query: 675 ETALAAFLSYTPGMDKGLRMYPLKFVWWLPAIPFMLSIFIYDEIRRFYLRRNPGGWLEQE 496
ETALA F+ Y PG+D GLRMY L+F WW A+PF + IF+YDEIRRF +RR PGGW+E+E
Sbjct: 934 ETALAWFMCYCPGLDNGLRMYGLRFSWWFCALPFSILIFVYDEIRRFLIRRYPGGWVERE 993
Query: 495 TYY 487
TYY
Sbjct: 994 TYY 996
>Z93378-6|CAB07586.1| 1049|Caenorhabditis elegans Hypothetical protein
C01G12.8 protein.
Length = 1049
Score = 126 bits (303), Expect = 3e-29
Identities = 57/123 (46%), Positives = 81/123 (65%)
Frame = -1
Query: 855 SYGQEWTYRDRKALEFTCHTAFFVSIVVVQWADLIICKTRRNSIIHQGMRNWALNFGLIF 676
SYGQ+W+Y RKALE C+ FF +IVV QW+DL KTR+NS++ QGM N LN +IF
Sbjct: 927 SYGQQWSYESRKALESCCYGTFFFTIVVTQWSDLFASKTRKNSLVMQGMENHVLNTSVIF 986
Query: 675 ETALAAFLSYTPGMDKGLRMYPLKFVWWLPAIPFMLSIFIYDEIRRFYLRRNPGGWLEQE 496
LA F+ TP +++ L + + A+PF I +YDE+RR+++R PGG++ +E
Sbjct: 987 TCFLAIFVLNTPFVNEVLGVQGFRLEIGFLALPFAFFIGLYDEVRRYFIRTYPGGYIYKE 1046
Query: 495 TYY 487
TYY
Sbjct: 1047 TYY 1049
>Z81457-11|CAB03818.1| 1049|Caenorhabditis elegans Hypothetical
protein C01G12.8 protein.
Length = 1049
Score = 126 bits (303), Expect = 3e-29
Identities = 57/123 (46%), Positives = 81/123 (65%)
Frame = -1
Query: 855 SYGQEWTYRDRKALEFTCHTAFFVSIVVVQWADLIICKTRRNSIIHQGMRNWALNFGLIF 676
SYGQ+W+Y RKALE C+ FF +IVV QW+DL KTR+NS++ QGM N LN +IF
Sbjct: 927 SYGQQWSYESRKALESCCYGTFFFTIVVTQWSDLFASKTRKNSLVMQGMENHVLNTSVIF 986
Query: 675 ETALAAFLSYTPGMDKGLRMYPLKFVWWLPAIPFMLSIFIYDEIRRFYLRRNPGGWLEQE 496
LA F+ TP +++ L + + A+PF I +YDE+RR+++R PGG++ +E
Sbjct: 987 TCFLAIFVLNTPFVNEVLGVQGFRLEIGFLALPFAFFIGLYDEVRRYFIRTYPGGYIYKE 1046
Query: 495 TYY 487
TYY
Sbjct: 1047 TYY 1049
>AF016433-4|AAB65385.2| 1054|Caenorhabditis elegans Hypothetical
protein C09H5.2a protein.
Length = 1054
Score = 52.4 bits (120), Expect = 4e-07
Identities = 29/93 (31%), Positives = 47/93 (50%)
Frame = -1
Query: 795 AFFVSIVVVQWADLIICKTRRNSIIHQGMRNWALNFGLIFETALAAFLSYTPGMDKGLRM 616
AF +++VV Q L +C TRR SI GM N +I + L ++ PG+
Sbjct: 952 AFHIAVVVGQAWHLWMCLTRRVSIFVHGMANIVAILAVIIDLLLICLFTFVPGVQYVFGS 1011
Query: 615 YPLKFVWWLPAIPFMLSIFIYDEIRRFYLRRNP 517
P + WL + + I+I++E+R+F +R P
Sbjct: 1012 QPPPWECWLVPVIVGIWIWIFNELRKFGIRNYP 1044
>AF016446-10|AAC24161.1| 1050|Caenorhabditis elegans Hypothetical
protein C02E7.1 protein.
Length = 1050
Score = 51.6 bits (118), Expect = 7e-07
Identities = 29/93 (31%), Positives = 48/93 (51%)
Frame = -1
Query: 795 AFFVSIVVVQWADLIICKTRRNSIIHQGMRNWALNFGLIFETALAAFLSYTPGMDKGLRM 616
AF +S+V+ Q L +C TRR SI G+ N F +I + L ++ PG+
Sbjct: 948 AFHISLVLGQAFHLWMCLTRRVSIFAHGLGNIVAIFAVIIDLLLICIFTFVPGVKYIFGS 1007
Query: 615 YPLKFVWWLPAIPFMLSIFIYDEIRRFYLRRNP 517
P + WL I + I+I++E+R+ +R+ P
Sbjct: 1008 QPPPWQCWLVPIVVGVWIWIFNELRKLGIRKYP 1040
>AM419898-1|CAL99238.1| 1121|Caenorhabditis elegans cation
transporting ATPase protein.
Length = 1121
Score = 43.2 bits (97), Expect = 2e-04
Identities = 27/94 (28%), Positives = 47/94 (50%), Gaps = 1/94 (1%)
Frame = -1
Query: 795 AFFVSIVVVQWADLIICKTRRNSIIHQGMRNWALNFGLIFETALAAFLSYTPGMDKGLRM 616
A+ +++V+ Q L C TRR S+ G+ N F +I E L YTP + +
Sbjct: 1019 AWQITLVMSQVFHLYNCTTRRVSVFRHGLTNIVSVFAVIIEILLLFMFVYTPVFQYIMDI 1078
Query: 615 Y-PLKFVWWLPAIPFMLSIFIYDEIRRFYLRRNP 517
+ P VW + I L + ++E+R++++R P
Sbjct: 1079 HTPPAHVWAIAPI-VGLYLLAFNEMRKYFIRNFP 1111
>AL132876-34|CAD21662.2| 1121|Caenorhabditis elegans Hypothetical
protein Y105E8A.12a protein.
Length = 1121
Score = 43.2 bits (97), Expect = 2e-04
Identities = 27/94 (28%), Positives = 47/94 (50%), Gaps = 1/94 (1%)
Frame = -1
Query: 795 AFFVSIVVVQWADLIICKTRRNSIIHQGMRNWALNFGLIFETALAAFLSYTPGMDKGLRM 616
A+ +++V+ Q L C TRR S+ G+ N F +I E L YTP + +
Sbjct: 1019 AWQITLVMSQVFHLYNCTTRRVSVFRHGLTNIVSVFAVIIEILLLFMFVYTPVFQYIMDI 1078
Query: 615 Y-PLKFVWWLPAIPFMLSIFIYDEIRRFYLRRNP 517
+ P VW + I L + ++E+R++++R P
Sbjct: 1079 HTPPAHVWAIAPI-VGLYLLAFNEMRKYFIRNFP 1111
>AF016433-5|AAN84877.1| 1039|Caenorhabditis elegans Hypothetical
protein C09H5.2b protein.
Length = 1039
Score = 36.3 bits (80), Expect = 0.028
Identities = 19/54 (35%), Positives = 28/54 (51%)
Frame = -1
Query: 795 AFFVSIVVVQWADLIICKTRRNSIIHQGMRNWALNFGLIFETALAAFLSYTPGM 634
AF +++VV Q L +C TRR SI GM N +I + L ++ PG+
Sbjct: 952 AFHIAVVVGQAWHLWMCLTRRVSIFVHGMANIVAILAVIIDLLLICLFTFVPGV 1005
>Z78420-6|CAB01711.2| 1243|Caenorhabditis elegans Hypothetical
protein F45H11.4 protein.
Length = 1243
Score = 30.7 bits (66), Expect = 1.4
Identities = 13/37 (35%), Positives = 23/37 (62%)
Frame = -2
Query: 512 AGSNKRLIIKQRRSLSTVVHQLVTAYIMFILCCCIGV 402
AGS KR++ K+ R L+T ++T ++ + C +GV
Sbjct: 672 AGSKKRILTKKPRFLTTFSQVVITWILVAVQCVIVGV 708
>Z78418-6|CAB01699.2| 1243|Caenorhabditis elegans Hypothetical
protein F45H11.4 protein.
Length = 1243
Score = 30.7 bits (66), Expect = 1.4
Identities = 13/37 (35%), Positives = 23/37 (62%)
Frame = -2
Query: 512 AGSNKRLIIKQRRSLSTVVHQLVTAYIMFILCCCIGV 402
AGS KR++ K+ R L+T ++T ++ + C +GV
Sbjct: 672 AGSKKRILTKKPRFLTTFSQVVITWILVAVQCVIVGV 708
>Z78540-1|CAB01736.1| 409|Caenorhabditis elegans Hypothetical
protein C33G3.3 protein.
Length = 409
Score = 30.3 bits (65), Expect = 1.8
Identities = 17/49 (34%), Positives = 26/49 (53%)
Frame = -1
Query: 684 LIFETALAAFLSYTPGMDKGLRMYPLKFVWWLPAIPFMLSIFIYDEIRR 538
LIF T +A FLS T K +R + V+ L +I + IF +++R
Sbjct: 285 LIFSTRIAPFLSSTASTPKPMRFLEIALVFNLISITTSIIIFCCMQVKR 333
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,965,153
Number of Sequences: 27780
Number of extensions: 389754
Number of successful extensions: 1096
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1055
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1096
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2129473654
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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