Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc18k22
         (863 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1B3.14 |vma3||V-type ATPase subunit c|Schizosaccharomyces po...    63   4e-11
SPAC732.01 |vma11||V-type ATPase proteolipid subunit|Schizosacch...    47   4e-06
SPAC2C4.13 |vma16||V-type ATPase subunit c''|Schizosaccharomyces...    35   0.013
SPAC4D7.11 |||conserved fungal protein|Schizosaccharomyces pombe...    28   2.0  
SPAC25B8.13c |isp7||2-OG-Fe|Schizosaccharomyces pombe|chr 1|||Ma...    27   2.6  
SPBC725.07 |pex5||peroxisomal targeting signal receptor |Schizos...    27   4.5  

>SPAC1B3.14 |vma3||V-type ATPase subunit c|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 161

 Score = 63.3 bits (147), Expect = 4e-11
 Identities = 31/35 (88%), Positives = 32/35 (91%)
 Frame = -3

Query: 861 VRGTAQQPRLFVGMILIXIFAEVLGLYGLIVAIYL 757
           VRGTAQQPRLFV MILI IFAEVLGLYGLIVA+ L
Sbjct: 117 VRGTAQQPRLFVAMILILIFAEVLGLYGLIVALLL 151


>SPAC732.01 |vma11||V-type ATPase proteolipid
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 162

 Score = 46.8 bits (106), Expect = 4e-06
 Identities = 22/35 (62%), Positives = 27/35 (77%)
 Frame = -3

Query: 861 VRGTAQQPRLFVGMILIXIFAEVLGLYGLIVAIYL 757
           V+   +Q R+FV M+LI IFAEVLGLYGLIV + L
Sbjct: 119 VQSFMRQDRIFVSMVLILIFAEVLGLYGLIVGLIL 153


>SPAC2C4.13 |vma16||V-type ATPase subunit c''|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 199

 Score = 35.1 bits (77), Expect = 0.013
 Identities = 15/31 (48%), Positives = 22/31 (70%)
 Frame = -3

Query: 849 AQQPRLFVGMILIXIFAEVLGLYGLIVAIYL 757
           AQ   LFV ++++ IF  VLGL+GLIV + +
Sbjct: 161 AQDASLFVKVLVVEIFGSVLGLFGLIVGLLI 191


>SPAC4D7.11 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 281

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 17/39 (43%), Positives = 25/39 (64%), Gaps = 3/39 (7%)
 Frame = +1

Query: 751 CVQVDGDD-KSV--KTQYFSENXNKNHSDE*PRLLSSTT 858
           C++VD +D K +  K+QY +EN N N  +  P L S+TT
Sbjct: 233 CIEVDSEDWKDLVWKSQYATENANTNSINNSP-LSSNTT 270


>SPAC25B8.13c |isp7||2-OG-Fe|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 397

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +2

Query: 158 NSARDRYTVPWGFNGFINYI 217
           NS  DRYT+P+   G I+Y+
Sbjct: 339 NSGSDRYTIPFFLQGNIDYV 358


>SPBC725.07 |pex5||peroxisomal targeting signal receptor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 598

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -3

Query: 357 RFLSTYQFYLRVTSSATSEDINLDYFSNKAK 265
           R +S    Y+RV S+    +INL YF + AK
Sbjct: 497 RAVSLQPQYVRVRSNMAVSNINLGYFEDAAK 527


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,421,331
Number of Sequences: 5004
Number of extensions: 70899
Number of successful extensions: 165
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 430470850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)