Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc18k22
(863 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_07_0267 + 42410174-42410252,42410679-42411097 58 1e-08
12_01_0443 - 3498848-3498980,3500504-3500789,3500928-3501006 55 6e-08
11_01_0440 - 3358786-3358918,3359861-3360146,3360460-3360538 55 6e-08
05_01_0043 - 295041-295173,296252-296537,296616-296697 55 6e-08
02_04_0181 - 20705307-20705439,20705991-20706037,20706181-207062... 54 1e-07
01_05_0664 + 24122958-24123070,24123184-24123261,24125040-241252... 33 0.22
09_06_0223 + 21659549-21659729,21659888-21659979 29 6.3
07_03_0800 + 21600050-21600106,21601506-21602663,21603029-21603520 29 6.3
03_05_0832 - 28037047-28037315,28037428-28037530,28037664-280376... 29 6.3
03_01_0570 - 4205739-4205776,4205846-4205897,4205939-4206067,420... 29 6.3
05_03_0591 + 15892772-15893412,15893478-15893910 28 8.4
>01_07_0267 + 42410174-42410252,42410679-42411097
Length = 165
Score = 57.6 bits (133), Expect = 1e-08
Identities = 28/35 (80%), Positives = 29/35 (82%)
Frame = -3
Query: 861 VRGTAQQPRLFVGMILIXIFAEVLGLYGLIVAIYL 757
VR AQQP+LFVGMILI IFAE LGLYGLIV I L
Sbjct: 121 VRANAQQPKLFVGMILILIFAEALGLYGLIVGIIL 155
Score = 29.5 bits (63), Expect = 3.6
Identities = 12/29 (41%), Positives = 20/29 (68%)
Frame = -3
Query: 843 QPRLFVGMILIXIFAEVLGLYGLIVAIYL 757
+P L + I+ + A VLG+YGLI+A+ +
Sbjct: 48 RPELVMKSIVPVVMAGVLGIYGLIIAVII 76
>12_01_0443 - 3498848-3498980,3500504-3500789,3500928-3501006
Length = 165
Score = 55.2 bits (127), Expect = 6e-08
Identities = 27/35 (77%), Positives = 28/35 (80%)
Frame = -3
Query: 861 VRGTAQQPRLFVGMILIXIFAEVLGLYGLIVAIYL 757
VR AQQP+LFVGMILI IFAE L LYGLIV I L
Sbjct: 121 VRANAQQPKLFVGMILILIFAEALALYGLIVGIIL 155
Score = 29.5 bits (63), Expect = 3.6
Identities = 12/29 (41%), Positives = 20/29 (68%)
Frame = -3
Query: 843 QPRLFVGMILIXIFAEVLGLYGLIVAIYL 757
+P L + I+ + A VLG+YGLI+A+ +
Sbjct: 48 RPELVMKSIVPVVMAGVLGIYGLIIAVII 76
>11_01_0440 - 3358786-3358918,3359861-3360146,3360460-3360538
Length = 165
Score = 55.2 bits (127), Expect = 6e-08
Identities = 27/35 (77%), Positives = 28/35 (80%)
Frame = -3
Query: 861 VRGTAQQPRLFVGMILIXIFAEVLGLYGLIVAIYL 757
VR AQQP+LFVGMILI IFAE L LYGLIV I L
Sbjct: 121 VRANAQQPKLFVGMILILIFAEALALYGLIVGIIL 155
Score = 29.5 bits (63), Expect = 3.6
Identities = 12/29 (41%), Positives = 20/29 (68%)
Frame = -3
Query: 843 QPRLFVGMILIXIFAEVLGLYGLIVAIYL 757
+P L + I+ + A VLG+YGLI+A+ +
Sbjct: 48 RPELVMKSIVPVVMAGVLGIYGLIIAVII 76
>05_01_0043 - 295041-295173,296252-296537,296616-296697
Length = 166
Score = 55.2 bits (127), Expect = 6e-08
Identities = 27/35 (77%), Positives = 28/35 (80%)
Frame = -3
Query: 861 VRGTAQQPRLFVGMILIXIFAEVLGLYGLIVAIYL 757
VR AQQP+LFVGMILI IFAE L LYGLIV I L
Sbjct: 122 VRANAQQPKLFVGMILILIFAEALALYGLIVGIIL 156
Score = 29.5 bits (63), Expect = 3.6
Identities = 12/29 (41%), Positives = 20/29 (68%)
Frame = -3
Query: 843 QPRLFVGMILIXIFAEVLGLYGLIVAIYL 757
+P L + I+ + A VLG+YGLI+A+ +
Sbjct: 49 RPELVMKSIVPVVMAGVLGIYGLIIAVII 77
>02_04_0181 -
20705307-20705439,20705991-20706037,20706181-20706229,
20706685-20707055
Length = 199
Score = 54.0 bits (124), Expect = 1e-07
Identities = 26/35 (74%), Positives = 28/35 (80%)
Frame = -3
Query: 861 VRGTAQQPRLFVGMILIXIFAEVLGLYGLIVAIYL 757
+R AQQP+LFVGMILI IFAE L LYGLIV I L
Sbjct: 155 LRANAQQPKLFVGMILILIFAEALALYGLIVGIIL 189
Score = 29.5 bits (63), Expect = 3.6
Identities = 12/29 (41%), Positives = 20/29 (68%)
Frame = -3
Query: 843 QPRLFVGMILIXIFAEVLGLYGLIVAIYL 757
+P L + I+ + A VLG+YGLI+A+ +
Sbjct: 50 RPELVMKSIVPVVMAGVLGIYGLIIAVII 78
>01_05_0664 +
24122958-24123070,24123184-24123261,24125040-24125210,
24125288-24125456
Length = 176
Score = 33.5 bits (73), Expect = 0.22
Identities = 15/31 (48%), Positives = 21/31 (67%)
Frame = -3
Query: 849 AQQPRLFVGMILIXIFAEVLGLYGLIVAIYL 757
AQ LFV +++I IF LGL+G+IV I +
Sbjct: 136 AQNSSLFVKILVIEIFGSALGLFGVIVGIIM 166
>09_06_0223 + 21659549-21659729,21659888-21659979
Length = 90
Score = 28.7 bits (61), Expect = 6.3
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +3
Query: 648 YRRRPSLCASSDSDNEHRGSEHGRRE 725
++RR S DNE +G +HGRRE
Sbjct: 35 WQRRKRDTNGSGKDNEGKGGQHGRRE 60
>07_03_0800 + 21600050-21600106,21601506-21602663,21603029-21603520
Length = 568
Score = 28.7 bits (61), Expect = 6.3
Identities = 12/28 (42%), Positives = 20/28 (71%), Gaps = 2/28 (7%)
Frame = +1
Query: 667 CARLQTQIMSIEA--RSTGDGSGVCSGR 744
C+R++TQ+ ++A R+TG G G +GR
Sbjct: 529 CSRMKTQMSKMKAARRATGGGGGAAAGR 556
>03_05_0832 -
28037047-28037315,28037428-28037530,28037664-28037695,
28037788-28038005,28038145-28038260,28038514-28038757,
28039129-28039216,28039513-28039588,28040126-28040164,
28040347-28040405,28041292-28041529
Length = 493
Score = 28.7 bits (61), Expect = 6.3
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = +2
Query: 176 YTVPWGFNGFINYIK 220
Y VPWG G +NYIK
Sbjct: 377 YIVPWGMYGCVNYIK 391
>03_01_0570 -
4205739-4205776,4205846-4205897,4205939-4206067,
4206183-4206258,4206360-4206412,4206494-4206555,
4206624-4206734,4206813-4206979,4207089-4207268,
4207598-4207687,4207773-4207921,4208367-4208501,
4208575-4208630,4208790-4208823,4209409-4209519
Length = 480
Score = 28.7 bits (61), Expect = 6.3
Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 4/61 (6%)
Frame = -3
Query: 720 VARAPSLYAHYLSLKTRTGM---VVAGSGSTLH-RVSEHPSTLVYYICSLLVFTYLQTGA 553
+ R+P + H LSL + GM +VA GS H + E+PS ++ + S+ + L+
Sbjct: 21 IGRSPRMQYHSLSLANQAGMEVDIVANGGSDPHLLLRENPSIHIHEMKSVQLTGILKISG 80
Query: 552 A 550
A
Sbjct: 81 A 81
>05_03_0591 + 15892772-15893412,15893478-15893910
Length = 357
Score = 28.3 bits (60), Expect = 8.4
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +3
Query: 729 CVFRAFILCTGRWRR*VRKDPILQRK 806
C RA ++C RWRR + DP QR+
Sbjct: 28 CAVRASLVCK-RWRRLLTDDPCFQRR 52
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,349,703
Number of Sequences: 37544
Number of extensions: 482465
Number of successful extensions: 1157
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1156
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2420970504
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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