Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc18k22
         (863 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X77936-1|CAA54908.1|  159|Drosophila melanogaster ductin, subuni...    73   7e-13
X55979-1|CAA39449.1|  159|Drosophila melanogaster protein ( Dros...    73   7e-13
BT012440-1|AAS93711.1|  159|Drosophila melanogaster RH30178p pro...    73   7e-13
AE014296-1953|AAN11872.1|  158|Drosophila melanogaster CG32090-P...    73   7e-13
AE013599-182|AAM68381.1|  159|Drosophila melanogaster CG3161-PD,...    73   7e-13
AE013599-181|AAF57360.1|  159|Drosophila melanogaster CG3161-PC,...    73   7e-13
AE013599-180|AAF57361.1|  159|Drosophila melanogaster CG3161-PB,...    73   7e-13
AE013599-179|AAF57359.1|  159|Drosophila melanogaster CG3161-PA,...    73   7e-13
BT023658-1|AAY85058.1|  171|Drosophila melanogaster IP04903p pro...    69   1e-11
AE014296-1954|AAF50062.2|  158|Drosophila melanogaster CG32089-P...    69   1e-11
BT022859-1|AAY55275.1|  193|Drosophila melanogaster IP07462p pro...    62   1e-09
AE014134-1944|AAF53003.1|  193|Drosophila melanogaster CG6737-PA...    62   1e-09
AE013599-2375|AAF57930.1|  155|Drosophila melanogaster CG9013-PA...    62   1e-09
BT022884-1|AAY55300.1|  229|Drosophila melanogaster IP07464p pro...    36   0.054
AE014297-1921|AAF55115.1|  201|Drosophila melanogaster CG7026-PA...    36   0.054
AY060235-1|AAL25274.1|  212|Drosophila melanogaster GH03514p pro...    35   0.17 
AE014297-1923|AAF55117.1|  212|Drosophila melanogaster CG7007-PA...    35   0.17 

>X77936-1|CAA54908.1|  159|Drosophila melanogaster ductin, subunit C
           proteolipidvacuolar proton channel protein.
          Length = 159

 Score = 72.5 bits (170), Expect = 7e-13
 Identities = 35/36 (97%), Positives = 35/36 (97%)
 Frame = -3

Query: 861 VRGTAQQPRLFVGMILIXIFAEVLGLYGLIVAIYLY 754
           VRGTAQQPRLFVGMILI IFAEVLGLYGLIVAIYLY
Sbjct: 122 VRGTAQQPRLFVGMILILIFAEVLGLYGLIVAIYLY 157


>X55979-1|CAA39449.1|  159|Drosophila melanogaster protein (
           Drosophila mRNA forvacuolar H+-ATPase. ).
          Length = 159

 Score = 72.5 bits (170), Expect = 7e-13
 Identities = 35/36 (97%), Positives = 35/36 (97%)
 Frame = -3

Query: 861 VRGTAQQPRLFVGMILIXIFAEVLGLYGLIVAIYLY 754
           VRGTAQQPRLFVGMILI IFAEVLGLYGLIVAIYLY
Sbjct: 122 VRGTAQQPRLFVGMILILIFAEVLGLYGLIVAIYLY 157


>BT012440-1|AAS93711.1|  159|Drosophila melanogaster RH30178p
           protein.
          Length = 159

 Score = 72.5 bits (170), Expect = 7e-13
 Identities = 35/36 (97%), Positives = 35/36 (97%)
 Frame = -3

Query: 861 VRGTAQQPRLFVGMILIXIFAEVLGLYGLIVAIYLY 754
           VRGTAQQPRLFVGMILI IFAEVLGLYGLIVAIYLY
Sbjct: 122 VRGTAQQPRLFVGMILILIFAEVLGLYGLIVAIYLY 157


>AE014296-1953|AAN11872.1|  158|Drosophila melanogaster CG32090-PA
           protein.
          Length = 158

 Score = 72.5 bits (170), Expect = 7e-13
 Identities = 35/36 (97%), Positives = 35/36 (97%)
 Frame = -3

Query: 861 VRGTAQQPRLFVGMILIXIFAEVLGLYGLIVAIYLY 754
           VRGTAQQPRLFVGMILI IFAEVLGLYGLIVAIYLY
Sbjct: 121 VRGTAQQPRLFVGMILILIFAEVLGLYGLIVAIYLY 156


>AE013599-182|AAM68381.1|  159|Drosophila melanogaster CG3161-PD,
           isoform D protein.
          Length = 159

 Score = 72.5 bits (170), Expect = 7e-13
 Identities = 35/36 (97%), Positives = 35/36 (97%)
 Frame = -3

Query: 861 VRGTAQQPRLFVGMILIXIFAEVLGLYGLIVAIYLY 754
           VRGTAQQPRLFVGMILI IFAEVLGLYGLIVAIYLY
Sbjct: 122 VRGTAQQPRLFVGMILILIFAEVLGLYGLIVAIYLY 157


>AE013599-181|AAF57360.1|  159|Drosophila melanogaster CG3161-PC,
           isoform C protein.
          Length = 159

 Score = 72.5 bits (170), Expect = 7e-13
 Identities = 35/36 (97%), Positives = 35/36 (97%)
 Frame = -3

Query: 861 VRGTAQQPRLFVGMILIXIFAEVLGLYGLIVAIYLY 754
           VRGTAQQPRLFVGMILI IFAEVLGLYGLIVAIYLY
Sbjct: 122 VRGTAQQPRLFVGMILILIFAEVLGLYGLIVAIYLY 157


>AE013599-180|AAF57361.1|  159|Drosophila melanogaster CG3161-PB,
           isoform B protein.
          Length = 159

 Score = 72.5 bits (170), Expect = 7e-13
 Identities = 35/36 (97%), Positives = 35/36 (97%)
 Frame = -3

Query: 861 VRGTAQQPRLFVGMILIXIFAEVLGLYGLIVAIYLY 754
           VRGTAQQPRLFVGMILI IFAEVLGLYGLIVAIYLY
Sbjct: 122 VRGTAQQPRLFVGMILILIFAEVLGLYGLIVAIYLY 157


>AE013599-179|AAF57359.1|  159|Drosophila melanogaster CG3161-PA,
           isoform A protein.
          Length = 159

 Score = 72.5 bits (170), Expect = 7e-13
 Identities = 35/36 (97%), Positives = 35/36 (97%)
 Frame = -3

Query: 861 VRGTAQQPRLFVGMILIXIFAEVLGLYGLIVAIYLY 754
           VRGTAQQPRLFVGMILI IFAEVLGLYGLIVAIYLY
Sbjct: 122 VRGTAQQPRLFVGMILILIFAEVLGLYGLIVAIYLY 157


>BT023658-1|AAY85058.1|  171|Drosophila melanogaster IP04903p
           protein.
          Length = 171

 Score = 68.5 bits (160), Expect = 1e-11
 Identities = 32/36 (88%), Positives = 34/36 (94%)
 Frame = -3

Query: 861 VRGTAQQPRLFVGMILIXIFAEVLGLYGLIVAIYLY 754
           VRGTA+QPRLFVGM+LI IFAEVL LYGLIVAIYLY
Sbjct: 133 VRGTAEQPRLFVGMVLILIFAEVLALYGLIVAIYLY 168


>AE014296-1954|AAF50062.2|  158|Drosophila melanogaster CG32089-PA
           protein.
          Length = 158

 Score = 68.5 bits (160), Expect = 1e-11
 Identities = 32/36 (88%), Positives = 34/36 (94%)
 Frame = -3

Query: 861 VRGTAQQPRLFVGMILIXIFAEVLGLYGLIVAIYLY 754
           VRGTA+QPRLFVGM+LI IFAEVL LYGLIVAIYLY
Sbjct: 120 VRGTAEQPRLFVGMVLILIFAEVLALYGLIVAIYLY 155


>BT022859-1|AAY55275.1|  193|Drosophila melanogaster IP07462p
           protein.
          Length = 193

 Score = 61.7 bits (143), Expect = 1e-09
 Identities = 29/36 (80%), Positives = 31/36 (86%)
 Frame = -3

Query: 861 VRGTAQQPRLFVGMILIXIFAEVLGLYGLIVAIYLY 754
           VR  A QPRLF+GMILI IFAEVLGLYGLI+ IYLY
Sbjct: 153 VRHIALQPRLFIGMILILIFAEVLGLYGLIIGIYLY 188


>AE014134-1944|AAF53003.1|  193|Drosophila melanogaster CG6737-PA
           protein.
          Length = 193

 Score = 61.7 bits (143), Expect = 1e-09
 Identities = 29/36 (80%), Positives = 31/36 (86%)
 Frame = -3

Query: 861 VRGTAQQPRLFVGMILIXIFAEVLGLYGLIVAIYLY 754
           VR  A QPRLF+GMILI IFAEVLGLYGLI+ IYLY
Sbjct: 153 VRHIALQPRLFIGMILILIFAEVLGLYGLIIGIYLY 188


>AE013599-2375|AAF57930.1|  155|Drosophila melanogaster CG9013-PA
           protein.
          Length = 155

 Score = 61.7 bits (143), Expect = 1e-09
 Identities = 29/36 (80%), Positives = 33/36 (91%)
 Frame = -3

Query: 861 VRGTAQQPRLFVGMILIXIFAEVLGLYGLIVAIYLY 754
           VR +AQQP+LFV +ILI IFAEVLGLYGLIVAIYL+
Sbjct: 118 VRASAQQPKLFVAIILILIFAEVLGLYGLIVAIYLF 153


>BT022884-1|AAY55300.1|  229|Drosophila melanogaster IP07464p
           protein.
          Length = 229

 Score = 36.3 bits (80), Expect = 0.054
 Identities = 15/31 (48%), Positives = 22/31 (70%)
 Frame = -3

Query: 849 AQQPRLFVGMILIXIFAEVLGLYGLIVAIYL 757
           A    LFV ++++ IF   +GL+GLIVAIY+
Sbjct: 191 AANSALFVKILIVEIFGSAIGLFGLIVAIYM 221


>AE014297-1921|AAF55115.1|  201|Drosophila melanogaster CG7026-PA
           protein.
          Length = 201

 Score = 36.3 bits (80), Expect = 0.054
 Identities = 15/31 (48%), Positives = 22/31 (70%)
 Frame = -3

Query: 849 AQQPRLFVGMILIXIFAEVLGLYGLIVAIYL 757
           A    LFV ++++ IF   +GL+GLIVAIY+
Sbjct: 163 AANSALFVKILIVEIFGSAIGLFGLIVAIYM 193



 Score = 29.5 bits (63), Expect = 6.2
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = -3

Query: 855 GTAQQPRLFVGMILIXIFAEVLGLYGLIVAIYL 757
           G  + PR+    ++  IF E + +YGLI AI L
Sbjct: 72  GGVRSPRIKTKNLISVIFCEAVAIYGLITAILL 104


>AY060235-1|AAL25274.1|  212|Drosophila melanogaster GH03514p
           protein.
          Length = 212

 Score = 34.7 bits (76), Expect = 0.17
 Identities = 14/31 (45%), Positives = 21/31 (67%)
 Frame = -3

Query: 849 AQQPRLFVGMILIXIFAEVLGLYGLIVAIYL 757
           A    LFV ++++ IF   +GL+GLIV IY+
Sbjct: 172 AANAALFVKILIVEIFGSAIGLFGLIVGIYM 202



 Score = 29.9 bits (64), Expect = 4.7
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = -3

Query: 861 VRGTAQQPRLFVGMILIXIFAEVLGLYGLIVAIYL 757
           V G  + PR+    ++  IF E + +YGLI AI L
Sbjct: 79  VGGGVKAPRIKTKNLISVIFCEAVAIYGLITAIVL 113


>AE014297-1923|AAF55117.1|  212|Drosophila melanogaster CG7007-PA
           protein.
          Length = 212

 Score = 34.7 bits (76), Expect = 0.17
 Identities = 14/31 (45%), Positives = 21/31 (67%)
 Frame = -3

Query: 849 AQQPRLFVGMILIXIFAEVLGLYGLIVAIYL 757
           A    LFV ++++ IF   +GL+GLIV IY+
Sbjct: 172 AANAALFVKILIVEIFGSAIGLFGLIVGIYM 202



 Score = 29.9 bits (64), Expect = 4.7
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = -3

Query: 861 VRGTAQQPRLFVGMILIXIFAEVLGLYGLIVAIYL 757
           V G  + PR+    ++  IF E + +YGLI AI L
Sbjct: 79  VGGGVKAPRIKTKNLISVIFCEAVAIYGLITAIVL 113


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 37,627,000
Number of Sequences: 53049
Number of extensions: 811547
Number of successful extensions: 2105
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 2015
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2105
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 4168047156
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)