Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc18k22
(863 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z29095-3|CAA82355.1| 161|Caenorhabditis elegans Hypothetical pr... 64 2e-10
AC024762-4|AAF59473.1| 161|Caenorhabditis elegans Vacuolar h at... 64 2e-10
AB009566-1|BAA75066.1| 161|Caenorhabditis elegans Vha3 protein ... 64 2e-10
AB000918-1|BAA22596.1| 161|Caenorhabditis elegans VHA-2 protein. 64 2e-10
Z29095-6|CAA82354.1| 169|Caenorhabditis elegans Hypothetical pr... 58 8e-09
AB000917-1|BAA22595.1| 169|Caenorhabditis elegans VHA-1 protein. 58 8e-09
Z68317-1|CAA92686.1| 214|Caenorhabditis elegans Hypothetical pr... 35 0.065
AB000919-1|BAA22597.1| 214|Caenorhabditis elegans VHA-4 protein. 35 0.065
Z82089-5|CAD91717.1| 4541|Caenorhabditis elegans Hypothetical pr... 30 1.9
Z82089-4|CAB54513.2| 4648|Caenorhabditis elegans Hypothetical pr... 30 1.9
Z82089-2|CAB05003.2| 4530|Caenorhabditis elegans Hypothetical pr... 30 1.9
Z81499-7|CAD91628.1| 4541|Caenorhabditis elegans Hypothetical pr... 30 1.9
Z81499-6|CAB54224.2| 4648|Caenorhabditis elegans Hypothetical pr... 30 1.9
Z81499-4|CAB04090.2| 4530|Caenorhabditis elegans Hypothetical pr... 30 1.9
U41541-2|ABA54426.1| 526|Caenorhabditis elegans Hypothetical pr... 30 1.9
U41541-1|ABA54425.1| 795|Caenorhabditis elegans Hypothetical pr... 30 1.9
Z68507-3|CAA92824.2| 1134|Caenorhabditis elegans Hypothetical pr... 29 4.3
>Z29095-3|CAA82355.1| 161|Caenorhabditis elegans Hypothetical
protein R10E11.2 protein.
Length = 161
Score = 63.7 bits (148), Expect = 2e-10
Identities = 30/35 (85%), Positives = 33/35 (94%)
Frame = -3
Query: 861 VRGTAQQPRLFVGMILIXIFAEVLGLYGLIVAIYL 757
VRGTAQQPRLFVGMILI IF+EVLGLYG+IVA+ L
Sbjct: 124 VRGTAQQPRLFVGMILILIFSEVLGLYGMIVALIL 158
Score = 29.1 bits (62), Expect = 4.3
Identities = 11/29 (37%), Positives = 20/29 (68%)
Frame = -3
Query: 843 QPRLFVGMILIXIFAEVLGLYGLIVAIYL 757
+P L + ++ I A ++G+YGL+VA+ L
Sbjct: 51 RPELIMKSVIPVIMAGIIGIYGLVVAMVL 79
>AC024762-4|AAF59473.1| 161|Caenorhabditis elegans Vacuolar h
atpase protein 3 protein.
Length = 161
Score = 63.7 bits (148), Expect = 2e-10
Identities = 30/35 (85%), Positives = 33/35 (94%)
Frame = -3
Query: 861 VRGTAQQPRLFVGMILIXIFAEVLGLYGLIVAIYL 757
VRGTAQQPRLFVGMILI IF+EVLGLYG+IVA+ L
Sbjct: 124 VRGTAQQPRLFVGMILILIFSEVLGLYGMIVALIL 158
Score = 29.1 bits (62), Expect = 4.3
Identities = 11/29 (37%), Positives = 20/29 (68%)
Frame = -3
Query: 843 QPRLFVGMILIXIFAEVLGLYGLIVAIYL 757
+P L + ++ I A ++G+YGL+VA+ L
Sbjct: 51 RPELIMKSVIPVIMAGIIGIYGLVVAMVL 79
>AB009566-1|BAA75066.1| 161|Caenorhabditis elegans Vha3 protein
protein.
Length = 161
Score = 63.7 bits (148), Expect = 2e-10
Identities = 30/35 (85%), Positives = 33/35 (94%)
Frame = -3
Query: 861 VRGTAQQPRLFVGMILIXIFAEVLGLYGLIVAIYL 757
VRGTAQQPRLFVGMILI IF+EVLGLYG+IVA+ L
Sbjct: 124 VRGTAQQPRLFVGMILILIFSEVLGLYGMIVALIL 158
Score = 29.1 bits (62), Expect = 4.3
Identities = 11/29 (37%), Positives = 20/29 (68%)
Frame = -3
Query: 843 QPRLFVGMILIXIFAEVLGLYGLIVAIYL 757
+P L + ++ I A ++G+YGL+VA+ L
Sbjct: 51 RPELIMKSVIPVIMAGIIGIYGLVVAMVL 79
>AB000918-1|BAA22596.1| 161|Caenorhabditis elegans VHA-2 protein.
Length = 161
Score = 63.7 bits (148), Expect = 2e-10
Identities = 30/35 (85%), Positives = 33/35 (94%)
Frame = -3
Query: 861 VRGTAQQPRLFVGMILIXIFAEVLGLYGLIVAIYL 757
VRGTAQQPRLFVGMILI IF+EVLGLYG+IVA+ L
Sbjct: 124 VRGTAQQPRLFVGMILILIFSEVLGLYGMIVALIL 158
Score = 29.1 bits (62), Expect = 4.3
Identities = 11/29 (37%), Positives = 20/29 (68%)
Frame = -3
Query: 843 QPRLFVGMILIXIFAEVLGLYGLIVAIYL 757
+P L + ++ I A ++G+YGL+VA+ L
Sbjct: 51 RPELIMKSVIPVIMAGIIGIYGLVVAMVL 79
>Z29095-6|CAA82354.1| 169|Caenorhabditis elegans Hypothetical
protein R10E11.8 protein.
Length = 169
Score = 58.0 bits (134), Expect = 8e-09
Identities = 27/35 (77%), Positives = 31/35 (88%)
Frame = -3
Query: 861 VRGTAQQPRLFVGMILIXIFAEVLGLYGLIVAIYL 757
VR +QQPR+FVGMILI IFAEVLGLYG+IVA+ L
Sbjct: 132 VRALSQQPRMFVGMILILIFAEVLGLYGMIVALIL 166
>AB000917-1|BAA22595.1| 169|Caenorhabditis elegans VHA-1 protein.
Length = 169
Score = 58.0 bits (134), Expect = 8e-09
Identities = 27/35 (77%), Positives = 31/35 (88%)
Frame = -3
Query: 861 VRGTAQQPRLFVGMILIXIFAEVLGLYGLIVAIYL 757
VR +QQPR+FVGMILI IFAEVLGLYG+IVA+ L
Sbjct: 132 VRALSQQPRMFVGMILILIFAEVLGLYGMIVALIL 166
>Z68317-1|CAA92686.1| 214|Caenorhabditis elegans Hypothetical
protein T01H3.1 protein.
Length = 214
Score = 35.1 bits (77), Expect = 0.065
Identities = 14/29 (48%), Positives = 21/29 (72%)
Frame = -3
Query: 849 AQQPRLFVGMILIXIFAEVLGLYGLIVAI 763
A P LFV +++I IFA +GL+G+I+ I
Sbjct: 175 AANPALFVKILIIEIFASAIGLFGMIIGI 203
>AB000919-1|BAA22597.1| 214|Caenorhabditis elegans VHA-4 protein.
Length = 214
Score = 35.1 bits (77), Expect = 0.065
Identities = 14/29 (48%), Positives = 21/29 (72%)
Frame = -3
Query: 849 AQQPRLFVGMILIXIFAEVLGLYGLIVAI 763
A P LFV +++I IFA +GL+G+I+ I
Sbjct: 175 AANPALFVKILIIEIFASAIGLFGMIIGI 203
>Z82089-5|CAD91717.1| 4541|Caenorhabditis elegans Hypothetical protein
ZK270.2e protein.
Length = 4541
Score = 30.3 bits (65), Expect = 1.9
Identities = 15/29 (51%), Positives = 19/29 (65%)
Frame = +2
Query: 602 TRVEGCSETLCKVDPLPATTIPVRVFRLR 688
TRV SE +VD +PA + PV+ FRLR
Sbjct: 3603 TRVASSSEEPEEVDVIPAESTPVKPFRLR 3631
>Z82089-4|CAB54513.2| 4648|Caenorhabditis elegans Hypothetical protein
ZK270.2d protein.
Length = 4648
Score = 30.3 bits (65), Expect = 1.9
Identities = 15/29 (51%), Positives = 19/29 (65%)
Frame = +2
Query: 602 TRVEGCSETLCKVDPLPATTIPVRVFRLR 688
TRV SE +VD +PA + PV+ FRLR
Sbjct: 3592 TRVASSSEEPEEVDVIPAESTPVKPFRLR 3620
>Z82089-2|CAB05003.2| 4530|Caenorhabditis elegans Hypothetical protein
ZK270.2a protein.
Length = 4530
Score = 30.3 bits (65), Expect = 1.9
Identities = 15/29 (51%), Positives = 19/29 (65%)
Frame = +2
Query: 602 TRVEGCSETLCKVDPLPATTIPVRVFRLR 688
TRV SE +VD +PA + PV+ FRLR
Sbjct: 3592 TRVASSSEEPEEVDVIPAESTPVKPFRLR 3620
>Z81499-7|CAD91628.1| 4541|Caenorhabditis elegans Hypothetical protein
ZK270.2e protein.
Length = 4541
Score = 30.3 bits (65), Expect = 1.9
Identities = 15/29 (51%), Positives = 19/29 (65%)
Frame = +2
Query: 602 TRVEGCSETLCKVDPLPATTIPVRVFRLR 688
TRV SE +VD +PA + PV+ FRLR
Sbjct: 3603 TRVASSSEEPEEVDVIPAESTPVKPFRLR 3631
>Z81499-6|CAB54224.2| 4648|Caenorhabditis elegans Hypothetical protein
ZK270.2d protein.
Length = 4648
Score = 30.3 bits (65), Expect = 1.9
Identities = 15/29 (51%), Positives = 19/29 (65%)
Frame = +2
Query: 602 TRVEGCSETLCKVDPLPATTIPVRVFRLR 688
TRV SE +VD +PA + PV+ FRLR
Sbjct: 3592 TRVASSSEEPEEVDVIPAESTPVKPFRLR 3620
>Z81499-4|CAB04090.2| 4530|Caenorhabditis elegans Hypothetical protein
ZK270.2a protein.
Length = 4530
Score = 30.3 bits (65), Expect = 1.9
Identities = 15/29 (51%), Positives = 19/29 (65%)
Frame = +2
Query: 602 TRVEGCSETLCKVDPLPATTIPVRVFRLR 688
TRV SE +VD +PA + PV+ FRLR
Sbjct: 3592 TRVASSSEEPEEVDVIPAESTPVKPFRLR 3620
>U41541-2|ABA54426.1| 526|Caenorhabditis elegans Hypothetical
protein C41A3.2b protein.
Length = 526
Score = 30.3 bits (65), Expect = 1.9
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +1
Query: 355 SQKKCSLLSPKIKHMCNKLIKYWGVIAR*HSCSI 456
S+K S+++ K+ H CN + Y V A H C++
Sbjct: 205 SEKSASVINEKVNHNCNICVVYAPVAATTHVCTM 238
>U41541-1|ABA54425.1| 795|Caenorhabditis elegans Hypothetical
protein C41A3.2a protein.
Length = 795
Score = 30.3 bits (65), Expect = 1.9
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +1
Query: 355 SQKKCSLLSPKIKHMCNKLIKYWGVIAR*HSCSI 456
S+K S+++ K+ H CN + Y V A H C++
Sbjct: 205 SEKSASVINEKVNHNCNICVVYAPVAATTHVCTM 238
>Z68507-3|CAA92824.2| 1134|Caenorhabditis elegans Hypothetical
protein M18.5 protein.
Length = 1134
Score = 29.1 bits (62), Expect = 4.3
Identities = 12/29 (41%), Positives = 20/29 (68%)
Frame = -3
Query: 666 GMVVAGSGSTLHRVSEHPSTLVYYICSLL 580
G++V GS S L++ +++ +V Y CSLL
Sbjct: 223 GVIVLGSNSVLYKPNDNLGEVVPYTCSLL 251
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,260,072
Number of Sequences: 27780
Number of extensions: 417100
Number of successful extensions: 1001
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 950
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1001
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2160943708
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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