Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc18k18
         (789 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_02_0211 - 13043968-13044646,13044752-13045037,13045903-130459...    29   4.2  
04_04_1661 + 35146662-35147288                                         28   7.4  
03_02_0954 - 12687373-12687582,12688885-12689067,12689160-126892...    28   7.4  
02_01_0725 - 5422477-5422641,5422721-5422792,5422876-5422958,542...    28   9.7  

>06_02_0211 -
           13043968-13044646,13044752-13045037,13045903-13045979,
           13046039-13046139,13046348-13046412,13048296-13048581
          Length = 497

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -1

Query: 528 EYIGGNDSNLIPNPGDSLCDN 466
           EY+  ND NL P  GD +C N
Sbjct: 250 EYVHRNDPNLSPREGDWICQN 270


>04_04_1661 + 35146662-35147288
          Length = 208

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 9/40 (22%), Positives = 22/40 (55%)
 Frame = -1

Query: 519 GGNDSNLIPNPGDSLCDNSLVYSIPVVIPYRSNQFVMYVR 400
           GG +   +P+P  +   +++ +S+  V+P  +  F++  R
Sbjct: 110 GGEEEKALPSPAQAAAASAMAFSVGAVVPLLAAGFIVNYR 149


>03_02_0954 -
           12687373-12687582,12688885-12689067,12689160-12689288,
           12689375-12689464,12689548-12689550
          Length = 204

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 20/82 (24%), Positives = 40/82 (48%), Gaps = 1/82 (1%)
 Frame = -1

Query: 681 KPDTLYLNLYQPVYRMNVHFCPTAIHEPSYFEVFITKSNWDRRNPITWNEL-EYIGGNDS 505
           K D +YL L   +YR  V    +  +      +F++K+N   R P++   L  ++ G ++
Sbjct: 20  KSDDVYLKLIVKLYRFLVRRTKSPFNAVILRRLFMSKTN---RPPLSLRRLVRFMEGKEN 76

Query: 504 NLIPNPGDSLCDNSLVYSIPVV 439
            +    G ++ D+  VY +P +
Sbjct: 77  QIAVIVG-TVTDDKRVYEVPAM 97


>02_01_0725 -
           5422477-5422641,5422721-5422792,5422876-5422958,
           5423113-5423173,5423305-5423381,5423456-5423522,
           5423770-5423803,5423894-5423974,5424285-5424436,
           5424529-5424615,5425019-5425126,5425906-5426259
          Length = 446

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
 Frame = -1

Query: 789 NQTKGLCPHTLCGAGSNDRN-SVXGDKSGMDEP-LNNWKPDTLYLNLYQPV 643
           + TKG   H L  AGS +   +V     G+  P LN  KPDTL+   + P+
Sbjct: 365 SSTKGAIGHLLGAAGSVEAIFTVLAIHHGIAPPTLNLEKPDTLFEGAFMPL 415


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,364,689
Number of Sequences: 37544
Number of extensions: 432745
Number of successful extensions: 921
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 895
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 921
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2127163404
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)