Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc18k18
         (789 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U53181-2|AAR04675.1| 1837|Caenorhabditis elegans Heavy chain, un...    31   1.2  
U53181-1|AAR04676.1| 1839|Caenorhabditis elegans Heavy chain, un...    31   1.2  
U52516-1|AAA97926.1| 1839|Caenorhabditis elegans hum-2 protein.        31   1.2  
Z81099-2|CAB03188.2|  297|Caenorhabditis elegans Hypothetical pr...    29   3.8  
U80843-16|AAB37958.1|  327|Caenorhabditis elegans Serpentine rec...    29   5.0  
AL110479-17|CAB54363.3|  177|Caenorhabditis elegans Hypothetical...    29   5.0  
Z68221-6|CAB97237.1|  583|Caenorhabditis elegans Hypothetical pr...    28   6.6  
Z68217-12|CAA92468.2|  583|Caenorhabditis elegans Hypothetical p...    28   6.6  

>U53181-2|AAR04675.1| 1837|Caenorhabditis elegans Heavy chain,
           unconventional myosinprotein 2, isoform a protein.
          Length = 1837

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 16/32 (50%), Positives = 18/32 (56%)
 Frame = +3

Query: 330 RLKFQTPDRRNYKILHPRDLCAANAHTLQIDL 425
           RL FQ P  RNY I +   LCAA  H +  DL
Sbjct: 294 RLVFQAPGERNYHIFY--QLCAARNHQVLKDL 323


>U53181-1|AAR04676.1| 1839|Caenorhabditis elegans Heavy chain,
           unconventional myosinprotein 2, isoform b protein.
          Length = 1839

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 16/32 (50%), Positives = 18/32 (56%)
 Frame = +3

Query: 330 RLKFQTPDRRNYKILHPRDLCAANAHTLQIDL 425
           RL FQ P  RNY I +   LCAA  H +  DL
Sbjct: 294 RLVFQAPGERNYHIFY--QLCAARNHQVLKDL 323


>U52516-1|AAA97926.1| 1839|Caenorhabditis elegans hum-2 protein.
          Length = 1839

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 16/32 (50%), Positives = 18/32 (56%)
 Frame = +3

Query: 330 RLKFQTPDRRNYKILHPRDLCAANAHTLQIDL 425
           RL FQ P  RNY I +   LCAA  H +  DL
Sbjct: 294 RLVFQAPGERNYHIFY--QLCAARNHQVLKDL 323


>Z81099-2|CAB03188.2|  297|Caenorhabditis elegans Hypothetical
           protein K08F9.3 protein.
          Length = 297

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +3

Query: 39  IADYEFEDMFEIVRIDCKDXXXXXAKYNM*LKFCF 143
           +AD+EF+D  +I+    K      AKYN  L F F
Sbjct: 253 VADFEFDDYNDILLNSVKPCNNTKAKYNFSLNFDF 287


>U80843-16|AAB37958.1|  327|Caenorhabditis elegans Serpentine
           receptor, class h protein274 protein.
          Length = 327

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 13/40 (32%), Positives = 24/40 (60%), Gaps = 6/40 (15%)
 Frame = +1

Query: 52  NLKTCLKLFVLIVKICY------YFLLNIICN*NFVFILL 153
           N++TC+ L +L++ +CY      + + N + N NF FI +
Sbjct: 242 NIQTCIPLAILLIPLCYLVISRVFLIYNQVAN-NFCFITI 280


>AL110479-17|CAB54363.3|  177|Caenorhabditis elegans Hypothetical
           protein Y105C5B.18 protein.
          Length = 177

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -1

Query: 786 QTKGLCPHTLCGAGSNDRNSVXG 718
           QT   C H  C +GS++ NSV G
Sbjct: 110 QTSAACHHLTCKSGSSNNNSVSG 132


>Z68221-6|CAB97237.1|  583|Caenorhabditis elegans Hypothetical
           protein F58G6.6 protein.
          Length = 583

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = -1

Query: 336 LDDECRYAQMAKVVRSQLQKHKLDARID 253
           L +EC Y Q    VR +  K KLD RI+
Sbjct: 516 LSEECNYYQTRYRVRIEQNKEKLDRRIE 543


>Z68217-12|CAA92468.2|  583|Caenorhabditis elegans Hypothetical
           protein F58G6.6 protein.
          Length = 583

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = -1

Query: 336 LDDECRYAQMAKVVRSQLQKHKLDARID 253
           L +EC Y Q    VR +  K KLD RI+
Sbjct: 516 LSEECNYYQTRYRVRIEQNKEKLDRRIE 543


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,558,363
Number of Sequences: 27780
Number of extensions: 420384
Number of successful extensions: 983
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 961
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 983
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1914239236
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)