Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc18k16
         (694 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF148954-1|AAD37411.1| 4280|Caenorhabditis elegans myotactin for...    29   4.2  
AF148953-1|AAD37410.1| 4450|Caenorhabditis elegans myotactin for...    29   4.2  
AF040648-5|AAK21413.1| 4450|Caenorhabditis elegans Lethal protei...    29   4.2  
AF040648-4|AAK21414.2| 4280|Caenorhabditis elegans Lethal protei...    29   4.2  

>AF148954-1|AAD37411.1| 4280|Caenorhabditis elegans myotactin form A
            protein.
          Length = 4280

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 11/38 (28%), Positives = 20/38 (52%)
 Frame = +3

Query: 309  VNYFHKHRVQQTTTCPTRYPRLINENTITIVNELIVDY 422
            V Y   +R++    CP   PR ++ + +T+ N   +DY
Sbjct: 1941 VGYDISYRLKHRLACPEEEPRDVSRDFVTVYNHKDLDY 1978


>AF148953-1|AAD37410.1| 4450|Caenorhabditis elegans myotactin form B
            protein.
          Length = 4450

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 11/38 (28%), Positives = 20/38 (52%)
 Frame = +3

Query: 309  VNYFHKHRVQQTTTCPTRYPRLINENTITIVNELIVDY 422
            V Y   +R++    CP   PR ++ + +T+ N   +DY
Sbjct: 1941 VGYDISYRLKHRLACPEEEPRDVSRDFVTVYNHKDLDY 1978


>AF040648-5|AAK21413.1| 4450|Caenorhabditis elegans Lethal protein
            805, isoform b protein.
          Length = 4450

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 11/38 (28%), Positives = 20/38 (52%)
 Frame = +3

Query: 309  VNYFHKHRVQQTTTCPTRYPRLINENTITIVNELIVDY 422
            V Y   +R++    CP   PR ++ + +T+ N   +DY
Sbjct: 1941 VGYDISYRLKHRLACPEEEPRDVSRDFVTVYNHKDLDY 1978


>AF040648-4|AAK21414.2| 4280|Caenorhabditis elegans Lethal protein
            805, isoform a protein.
          Length = 4280

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 11/38 (28%), Positives = 20/38 (52%)
 Frame = +3

Query: 309  VNYFHKHRVQQTTTCPTRYPRLINENTITIVNELIVDY 422
            V Y   +R++    CP   PR ++ + +T+ N   +DY
Sbjct: 1941 VGYDISYRLKHRLACPEEEPRDVSRDFVTVYNHKDLDY 1978


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,893,895
Number of Sequences: 27780
Number of extensions: 160182
Number of successful extensions: 270
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 270
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 270
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1592382278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)