Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc18k14
         (801 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY122256-1|AAM52768.1| 1153|Drosophila melanogaster SD07343p pro...    33   0.45 
AF475087-1|AAL78679.1| 1985|Drosophila melanogaster transcriptio...    33   0.45 
AF217844-1|AAF34752.1| 1966|Drosophila melanogaster GRUNGE protein.    33   0.45 
AE014296-1461|AAN12008.1| 1966|Drosophila melanogaster CG6964-PA...    33   0.45 
AE014296-1460|AAS65054.1| 1985|Drosophila melanogaster CG6964-PD...    33   0.45 
AE014296-1459|AAF50413.2| 1985|Drosophila melanogaster CG6964-PB...    33   0.45 
AE014296-1458|AAO41268.1| 1988|Drosophila melanogaster CG6964-PC...    33   0.45 
AY070912-1|AAL48534.1|  201|Drosophila melanogaster RE02355p pro...    32   1.0  
AE013599-730|AAF59031.1|  201|Drosophila melanogaster CG13746-PA...    32   1.0  
BT015960-1|AAV36845.1|  110|Drosophila melanogaster RH46982p pro...    31   2.4  
AE014296-2592|AAN11770.1|  110|Drosophila melanogaster CG32151-P...    31   2.4  
AY128414-1|AAM75007.1|  311|Drosophila melanogaster GH04057p pro...    30   4.2  
AE014298-2029|AAF48366.1|  308|Drosophila melanogaster CG9400-PA...    30   4.2  
AY061177-1|AAL28725.1|  101|Drosophila melanogaster LD14555p pro...    29   9.8  

>AY122256-1|AAM52768.1| 1153|Drosophila melanogaster SD07343p
           protein.
          Length = 1153

 Score = 33.1 bits (72), Expect = 0.45
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = +3

Query: 684 SKMGNKAPSCPPQPQKWEVKHRSAHLTSKMG 776
           S   ++ PS PPQPQ+++  H S H+ S  G
Sbjct: 125 SNSNSQPPSMPPQPQQFQSPHPSPHMPSPAG 155



 Score = 28.7 bits (61), Expect = 9.8
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +1

Query: 649 TGSKAPSCPPQPQKWEIKHRRAHL 720
           + S+ PS PPQPQ+++  H   H+
Sbjct: 127 SNSQPPSMPPQPQQFQSPHPSPHM 150


>AF475087-1|AAL78679.1| 1985|Drosophila melanogaster transcriptional
            corepressor Atro protein.
          Length = 1985

 Score = 33.1 bits (72), Expect = 0.45
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = +3

Query: 684  SKMGNKAPSCPPQPQKWEVKHRSAHLTSKMG 776
            S   ++ PS PPQPQ+++  H S H+ S  G
Sbjct: 957  SNSNSQPPSMPPQPQQFQSPHPSPHMPSPAG 987



 Score = 28.7 bits (61), Expect = 9.8
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +1

Query: 649  TGSKAPSCPPQPQKWEIKHRRAHL 720
            + S+ PS PPQPQ+++  H   H+
Sbjct: 959  SNSQPPSMPPQPQQFQSPHPSPHM 982


>AF217844-1|AAF34752.1| 1966|Drosophila melanogaster GRUNGE protein.
          Length = 1966

 Score = 33.1 bits (72), Expect = 0.45
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = +3

Query: 684  SKMGNKAPSCPPQPQKWEVKHRSAHLTSKMG 776
            S   ++ PS PPQPQ+++  H S H+ S  G
Sbjct: 957  SNSNSQPPSMPPQPQQFQSPHPSPHMPSPAG 987



 Score = 28.7 bits (61), Expect = 9.8
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +1

Query: 649  TGSKAPSCPPQPQKWEIKHRRAHL 720
            + S+ PS PPQPQ+++  H   H+
Sbjct: 959  SNSQPPSMPPQPQQFQSPHPSPHM 982


>AE014296-1461|AAN12008.1| 1966|Drosophila melanogaster CG6964-PA,
            isoform A protein.
          Length = 1966

 Score = 33.1 bits (72), Expect = 0.45
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = +3

Query: 684  SKMGNKAPSCPPQPQKWEVKHRSAHLTSKMG 776
            S   ++ PS PPQPQ+++  H S H+ S  G
Sbjct: 957  SNSNSQPPSMPPQPQQFQSPHPSPHMPSPAG 987



 Score = 28.7 bits (61), Expect = 9.8
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +1

Query: 649  TGSKAPSCPPQPQKWEIKHRRAHL 720
            + S+ PS PPQPQ+++  H   H+
Sbjct: 959  SNSQPPSMPPQPQQFQSPHPSPHM 982


>AE014296-1460|AAS65054.1| 1985|Drosophila melanogaster CG6964-PD,
            isoform D protein.
          Length = 1985

 Score = 33.1 bits (72), Expect = 0.45
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = +3

Query: 684  SKMGNKAPSCPPQPQKWEVKHRSAHLTSKMG 776
            S   ++ PS PPQPQ+++  H S H+ S  G
Sbjct: 957  SNSNSQPPSMPPQPQQFQSPHPSPHMPSPAG 987



 Score = 28.7 bits (61), Expect = 9.8
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +1

Query: 649  TGSKAPSCPPQPQKWEIKHRRAHL 720
            + S+ PS PPQPQ+++  H   H+
Sbjct: 959  SNSQPPSMPPQPQQFQSPHPSPHM 982


>AE014296-1459|AAF50413.2| 1985|Drosophila melanogaster CG6964-PB,
            isoform B protein.
          Length = 1985

 Score = 33.1 bits (72), Expect = 0.45
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = +3

Query: 684  SKMGNKAPSCPPQPQKWEVKHRSAHLTSKMG 776
            S   ++ PS PPQPQ+++  H S H+ S  G
Sbjct: 957  SNSNSQPPSMPPQPQQFQSPHPSPHMPSPAG 987



 Score = 28.7 bits (61), Expect = 9.8
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +1

Query: 649  TGSKAPSCPPQPQKWEIKHRRAHL 720
            + S+ PS PPQPQ+++  H   H+
Sbjct: 959  SNSQPPSMPPQPQQFQSPHPSPHM 982


>AE014296-1458|AAO41268.1| 1988|Drosophila melanogaster CG6964-PC,
            isoform C protein.
          Length = 1988

 Score = 33.1 bits (72), Expect = 0.45
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = +3

Query: 684  SKMGNKAPSCPPQPQKWEVKHRSAHLTSKMG 776
            S   ++ PS PPQPQ+++  H S H+ S  G
Sbjct: 957  SNSNSQPPSMPPQPQQFQSPHPSPHMPSPAG 987



 Score = 28.7 bits (61), Expect = 9.8
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +1

Query: 649  TGSKAPSCPPQPQKWEIKHRRAHL 720
            + S+ PS PPQPQ+++  H   H+
Sbjct: 959  SNSQPPSMPPQPQQFQSPHPSPHM 982


>AY070912-1|AAL48534.1|  201|Drosophila melanogaster RE02355p
           protein.
          Length = 201

 Score = 31.9 bits (69), Expect = 1.0
 Identities = 27/87 (31%), Positives = 41/87 (47%), Gaps = 7/87 (8%)
 Frame = +3

Query: 561 Y*TLPTQHS*TV-GTQNPAESASNHTAQKINGK*----STVVPTSTSKMGNKAPSCPPQP 725
           Y TL T+ +  V   +  AE+ S     + NGK      T VPT+++K G+K P   PQ 
Sbjct: 106 YGTLQTKKTVEVHANEEAAEAQSAPPTAETNGKAPPATKTPVPTNSTKDGDKKPVAKPQE 165

Query: 726 Q--KWEVKHRSAHLTSKMGSKHRSXPP 800
           Q  K   K     ++++  S   + PP
Sbjct: 166 QLPKRPAKRTRGSMSNESISPSTTPPP 192


>AE013599-730|AAF59031.1|  201|Drosophila melanogaster CG13746-PA
           protein.
          Length = 201

 Score = 31.9 bits (69), Expect = 1.0
 Identities = 27/87 (31%), Positives = 41/87 (47%), Gaps = 7/87 (8%)
 Frame = +3

Query: 561 Y*TLPTQHS*TV-GTQNPAESASNHTAQKINGK*----STVVPTSTSKMGNKAPSCPPQP 725
           Y TL T+ +  V   +  AE+ S     + NGK      T VPT+++K G+K P   PQ 
Sbjct: 106 YGTLQTKKTVEVHANEEAAEAQSAPPTAETNGKAPPATKTPVPTNSTKDGDKKPVAKPQE 165

Query: 726 Q--KWEVKHRSAHLTSKMGSKHRSXPP 800
           Q  K   K     ++++  S   + PP
Sbjct: 166 QLPKRPAKRTRGSMSNESISPSTTPPP 192


>BT015960-1|AAV36845.1|  110|Drosophila melanogaster RH46982p
           protein.
          Length = 110

 Score = 30.7 bits (66), Expect = 2.4
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = -2

Query: 707 RCFISHF*G*GGHDGALLPVYFLSSMVRCGFGRILRPYCLA 585
           RCF SH+   GG   A + +  L++ + C   R  R +CLA
Sbjct: 6   RCFSSHYCEGGGQTNAFVSMSVLNTALECREFRRKRHFCLA 46


>AE014296-2592|AAN11770.1|  110|Drosophila melanogaster CG32151-PA
           protein.
          Length = 110

 Score = 30.7 bits (66), Expect = 2.4
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = -2

Query: 707 RCFISHF*G*GGHDGALLPVYFLSSMVRCGFGRILRPYCLA 585
           RCF SH+   GG   A + +  L++ + C   R  R +CLA
Sbjct: 6   RCFSSHYCEGGGQTNAFVSMSVLNTALECREFRRKRHFCLA 46


>AY128414-1|AAM75007.1|  311|Drosophila melanogaster GH04057p
           protein.
          Length = 311

 Score = 29.9 bits (64), Expect = 4.2
 Identities = 22/71 (30%), Positives = 32/71 (45%), Gaps = 4/71 (5%)
 Frame = +3

Query: 591 TVGTQNPAESASNHTA---QKINGK*STVVP-TSTSKMGNKAPSCPPQPQKWEVKHRSAH 758
           T+ T  PA S     A   +  NG     VP T+    G+ +P+C P+P+  E+  R   
Sbjct: 41  TITTTTPASSGGYCAAALCELYNGTHLVHVPHTACGNNGSFSPACGPEPKLLEMSERRRQ 100

Query: 759 LTSKMGSKHRS 791
           L   M +  RS
Sbjct: 101 LLLDMHNLARS 111


>AE014298-2029|AAF48366.1|  308|Drosophila melanogaster CG9400-PA
           protein.
          Length = 308

 Score = 29.9 bits (64), Expect = 4.2
 Identities = 22/71 (30%), Positives = 32/71 (45%), Gaps = 4/71 (5%)
 Frame = +3

Query: 591 TVGTQNPAESASNHTA---QKINGK*STVVP-TSTSKMGNKAPSCPPQPQKWEVKHRSAH 758
           T+ T  PA S     A   +  NG     VP T+    G+ +P+C P+P+  E+  R   
Sbjct: 38  TITTTTPASSGGYCAAALCELYNGTHLVHVPHTACGNNGSFSPACGPEPKLLEMSERRRQ 97

Query: 759 LTSKMGSKHRS 791
           L   M +  RS
Sbjct: 98  LLLDMHNLARS 108


>AY061177-1|AAL28725.1|  101|Drosophila melanogaster LD14555p
           protein.
          Length = 101

 Score = 28.7 bits (61), Expect = 9.8
 Identities = 20/62 (32%), Positives = 30/62 (48%)
 Frame = -3

Query: 247 ICFC*EMKRSRTPRRQERPCYRILATPDREPALKL*KRSLAAPLPLFCAWRSCVRFLLKH 68
           +C C   K ++T +R E+ C R L T     ALK  K    AP P  C  +  ++ +L+ 
Sbjct: 26  VCACVGAKWNQTSQRVEQCCQRSLIT-----ALKK-KSPFFAPPPPLCQRKLKIQIVLQK 79

Query: 67  VW 62
            W
Sbjct: 80  FW 81


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 37,727,790
Number of Sequences: 53049
Number of extensions: 849146
Number of successful extensions: 2284
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 2086
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2269
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 3736869864
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)