Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc18k14
         (801 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF125964-1|AAD14753.1|  471|Caenorhabditis elegans Hypothetical ...    29   2.9  
AF016450-10|AAB65990.1|  166|Caenorhabditis elegans Hypothetical...    29   3.9  
Z82094-3|CAB05024.1| 2561|Caenorhabditis elegans Hypothetical pr...    28   6.8  
Z81120-8|CAB03348.1| 2561|Caenorhabditis elegans Hypothetical pr...    28   6.8  
AL034488-14|CAE11311.1|  341|Caenorhabditis elegans Hypothetical...    28   8.9  
AF068719-7|AAO21425.1|  399|Caenorhabditis elegans Uncoordinated...    28   8.9  
AF068719-6|AAV58864.1|  457|Caenorhabditis elegans Uncoordinated...    28   8.9  
AF068719-5|AAC17781.1|  458|Caenorhabditis elegans Uncoordinated...    28   8.9  

>AF125964-1|AAD14753.1|  471|Caenorhabditis elegans Hypothetical
           protein W03G1.5 protein.
          Length = 471

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 12/32 (37%), Positives = 13/32 (40%)
 Frame = +3

Query: 705 PSCPPQPQKWEVKHRSAHLTSKMGSKHRSXPP 800
           P CPP P  W    R  H      + HRS  P
Sbjct: 440 PPCPPPPPFWPPHRRGGHCHHHHHNGHRSFSP 471


>AF016450-10|AAB65990.1|  166|Caenorhabditis elegans Hypothetical
           protein B0238.12 protein.
          Length = 166

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 17/65 (26%), Positives = 27/65 (41%)
 Frame = -2

Query: 317 GCIFFCYVTEGDLVDASSDVAGRDMLLLRDEAVEDASPSGTAVLPNPGNPRPRASAKTIK 138
           GC  + Y  +  ++     V G   L  R    E+    GTA  P+  NP P  + + I 
Sbjct: 12  GC--YVYAQDAQILPVGGQVGGGQRLPCRGRN-EEYKTCGTACEPSCTNPNPMCTKQCIN 68

Query: 137 TIPRC 123
            + +C
Sbjct: 69  NVCQC 73


>Z82094-3|CAB05024.1| 2561|Caenorhabditis elegans Hypothetical protein
            T12D8.1 protein.
          Length = 2561

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 9/64 (14%)
 Frame = -2

Query: 302  CYVTEGDLVDASSDVAG------RDMLLLRDE---AVEDASPSGTAVLPNPGNPRPRASA 150
            C +TE   VD   DV G      RD+L ++DE   ++ED  P      P   +P P A+ 
Sbjct: 1670 CDITEESSVDEKKDVCGRLHEQIRDLLAIKDEVAWSMEDTPPES----PVSRSPEPEATV 1725

Query: 149  KTIK 138
              ++
Sbjct: 1726 GAVQ 1729


>Z81120-8|CAB03348.1| 2561|Caenorhabditis elegans Hypothetical protein
            T12D8.1 protein.
          Length = 2561

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 9/64 (14%)
 Frame = -2

Query: 302  CYVTEGDLVDASSDVAG------RDMLLLRDE---AVEDASPSGTAVLPNPGNPRPRASA 150
            C +TE   VD   DV G      RD+L ++DE   ++ED  P      P   +P P A+ 
Sbjct: 1670 CDITEESSVDEKKDVCGRLHEQIRDLLAIKDEVAWSMEDTPPES----PVSRSPEPEATV 1725

Query: 149  KTIK 138
              ++
Sbjct: 1726 GAVQ 1729


>AL034488-14|CAE11311.1|  341|Caenorhabditis elegans Hypothetical
           protein Y54G11A.15 protein.
          Length = 341

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
 Frame = -1

Query: 780 YFPFLR*GGHFGALLPIFEVEVGTTVLYFPF-LRLRWARRCFTSRLFFEQ 634
           + PF   GG  GA++ +FE      V    F +R +W RR + + +F+ Q
Sbjct: 100 WLPFASTGGMLGAMVNLFEHRHQAIVTNSRFVMRRKWTRRIYYT-IFYTQ 148


>AF068719-7|AAO21425.1|  399|Caenorhabditis elegans Uncoordinated
           protein 23, isoform b protein.
          Length = 399

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 14/47 (29%), Positives = 22/47 (46%)
 Frame = +3

Query: 660 STVVPTSTSKMGNKAPSCPPQPQKWEVKHRSAHLTSKMGSKHRSXPP 800
           ST  PTST +  ++    PPQ  + + +      T+   +K  S PP
Sbjct: 83  STQSPTSTLRRNSQQNQAPPQYSQQQPQQAQQRQTTPPSTKASSRPP 129


>AF068719-6|AAV58864.1|  457|Caenorhabditis elegans Uncoordinated
           protein 23, isoform c protein.
          Length = 457

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 14/47 (29%), Positives = 22/47 (46%)
 Frame = +3

Query: 660 STVVPTSTSKMGNKAPSCPPQPQKWEVKHRSAHLTSKMGSKHRSXPP 800
           ST  PTST +  ++    PPQ  + + +      T+   +K  S PP
Sbjct: 141 STQSPTSTLRRNSQQNQAPPQYSQQQPQQAQQRQTTPPSTKASSRPP 187


>AF068719-5|AAC17781.1|  458|Caenorhabditis elegans Uncoordinated
           protein 23, isoform a protein.
          Length = 458

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 14/47 (29%), Positives = 22/47 (46%)
 Frame = +3

Query: 660 STVVPTSTSKMGNKAPSCPPQPQKWEVKHRSAHLTSKMGSKHRSXPP 800
           ST  PTST +  ++    PPQ  + + +      T+   +K  S PP
Sbjct: 142 STQSPTSTLRRNSQQNQAPPQYSQQQPQQAQQRQTTPPSTKASSRPP 188


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,306,884
Number of Sequences: 27780
Number of extensions: 431283
Number of successful extensions: 1192
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1096
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1188
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1956310428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)