Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc18k13
         (726 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0408 - 3616655-3617108,3617190-3617596,3618120-3618287           28   6.6  
07_01_1205 - 11485757-11485974,11486130-11486229                       28   8.7  
04_04_1163 - 31398565-31398654,31398729-31398812,31398893-313990...    28   8.7  
01_05_0553 + 23185473-23186188,23187096-23187101,23187230-231873...    28   8.7  

>08_01_0408 - 3616655-3617108,3617190-3617596,3618120-3618287
          Length = 342

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 16/45 (35%), Positives = 22/45 (48%)
 Frame = +1

Query: 37  CNLNEFYLNSDSTVKISANVGRPVFKIERSTVCLVRVF*RSRWRK 171
           C L E Y  S   +KIS NV RP  +I   +  L  +  +  W+K
Sbjct: 168 CTLEELYAGSTRKMKISRNVVRPTGQIGTESEILT-IDIKPGWKK 211


>07_01_1205 - 11485757-11485974,11486130-11486229
          Length = 105

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +2

Query: 548 CSLSNCNDKSKFLNRGAFIAKTD 616
           C+L+NC   SK L+ G  I KTD
Sbjct: 55  CALNNCEPNSKVLDPGFGIFKTD 77


>04_04_1163 -
           31398565-31398654,31398729-31398812,31398893-31399037,
           31399118-31399239,31399338-31399376,31399491-31399601,
           31399682-31399804,31399946-31400032,31400136-31400207,
           31400349-31400621,31400704-31400895,31400988-31401171,
           31401339-31401480,31401578-31401821,31401959-31402603,
           31403024-31403293
          Length = 940

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -3

Query: 316 IVCFVIRVLCASNVLDSVKVNSYLYG 239
           +   +   LC SN+L  VK +++LYG
Sbjct: 359 LASIIAPALCPSNILPKVKFSTFLYG 384


>01_05_0553 +
           23185473-23186188,23187096-23187101,23187230-23187374,
           23187887-23188159,23188275-23188338,23188479-23188744,
           23188951-23189045,23189544-23189718,23190669-23191063,
           23191830-23191953,23192864-23192959,23193049-23193120,
           23194687-23194824,23195369-23195549,23195602-23195963,
           23196944-23197386,23197461-23197763,23197857-23198081,
           23198260-23198350,23198702-23198779,23198939-23199229,
           23199316-23199513,23199681-23200163,23200488-23200562,
           23201163-23201324,23201400-23201729,23201816-23201916,
           23202477-23202581,23202931-23203162,23203913-23204257,
           23204346-23204447,23206010-23206153,23206463-23206551,
           23206979-23207061,23207172-23207287,23207824-23207909,
           23208461-23208560,23209270-23209335
          Length = 2451

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
 Frame = +2

Query: 149 FNVLDGVKVNPILYAVGTAPL--TANVRKRTHSIQI*VNFYAIEN 277
           F+V+ G+K    +  VG  PL  T  + KR H I++    YA+++
Sbjct: 493 FDVVPGIKFQDAIELVGMQPLSSTTAIWKRMHDIELMHMRYALQS 537


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,590,806
Number of Sequences: 37544
Number of extensions: 334026
Number of successful extensions: 538
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 535
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 538
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1898162308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)