Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc18k13
         (726 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92806-5|CAB07255.2| 1251|Caenorhabditis elegans Hypothetical pr...    29   2.6  
U55374-8|AAB36868.3| 1538|Caenorhabditis elegans Uncoordinated p...    28   7.8  
U55374-6|AAM69092.1| 1926|Caenorhabditis elegans Uncoordinated p...    28   7.8  
U55374-5|AAP82640.2| 2027|Caenorhabditis elegans Uncoordinated p...    28   7.8  
U40948-5|AAA81731.2|  955|Caenorhabditis elegans Hypothetical pr...    28   7.8  
U25119-1|AAA85728.1| 1053|Caenorhabditis elegans Unc-2 protein.        28   7.8  
AY264781-1|AAP13107.1| 2027|Caenorhabditis elegans high voltage ...    28   7.8  

>Z92806-5|CAB07255.2| 1251|Caenorhabditis elegans Hypothetical
           protein K10G4.5 protein.
          Length = 1251

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 14/42 (33%), Positives = 25/42 (59%)
 Frame = +1

Query: 232 NPFHTNMS*LLRYRERYSHKAHGLRNIRFQVINLKSEMDYLK 357
           NPF  N+      RE +++++    N+R  ++N KS ++YLK
Sbjct: 488 NPFSVNIFSKEELREVFANRSSFSDNLRLILLNQKSPINYLK 529


>U55374-8|AAB36868.3| 1538|Caenorhabditis elegans Uncoordinated
           protein 2, isoform a protein.
          Length = 1538

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = +2

Query: 143 EFFNVLDGVKVNPILYAVGTAPLTANVRKRTHSIQ 247
           +F+N+LDG+ V   L+A G A    +  K  ++I+
Sbjct: 802 DFWNILDGIVVTCALFAFGFAGTEGSAGKNLNTIK 836


>U55374-6|AAM69092.1| 1926|Caenorhabditis elegans Uncoordinated
           protein 2, isoform c protein.
          Length = 1926

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = +2

Query: 143 EFFNVLDGVKVNPILYAVGTAPLTANVRKRTHSIQ 247
           +F+N+LDG+ V   L+A G A    +  K  ++I+
Sbjct: 802 DFWNILDGIVVTCALFAFGFAGTEGSAGKNLNTIK 836


>U55374-5|AAP82640.2| 2027|Caenorhabditis elegans Uncoordinated
            protein 2, isoform b protein.
          Length = 2027

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = +2

Query: 143  EFFNVLDGVKVNPILYAVGTAPLTANVRKRTHSIQ 247
            +F+N+LDG+ V   L+A G A    +  K  ++I+
Sbjct: 921  DFWNILDGIVVTCALFAFGFAGTEGSAGKNLNTIK 955


>U40948-5|AAA81731.2|  955|Caenorhabditis elegans Hypothetical
           protein F55D10.1 protein.
          Length = 955

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 12/42 (28%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = +1

Query: 22  ADWTYCNLNEFYLNSDSTVK-ISANVGRPVFKIERSTVCLVR 144
           +D+ Y N N +Y+N D  +K ++A+  + V  I  +  C  +
Sbjct: 290 SDFQYTNANSWYVNLDKLIKYVNADTSKKVRVIYSTPACYTK 331


>U25119-1|AAA85728.1| 1053|Caenorhabditis elegans Unc-2 protein.
          Length = 1053

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = +2

Query: 143 EFFNVLDGVKVNPILYAVGTAPLTANVRKRTHSIQ 247
           +F+N+LDG+ V   L+A G A    +  K  ++I+
Sbjct: 408 DFWNILDGIVVTCALFAFGFAGTEGSAGKNLNTIK 442


>AY264781-1|AAP13107.1| 2027|Caenorhabditis elegans high voltage
            activated calciumchannel alpha-1 subunit protein.
          Length = 2027

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = +2

Query: 143  EFFNVLDGVKVNPILYAVGTAPLTANVRKRTHSIQ 247
            +F+N+LDG+ V   L+A G A    +  K  ++I+
Sbjct: 921  DFWNILDGIVVTCALFAFGFAGTEGSAGKNLNTIK 955


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,120,348
Number of Sequences: 27780
Number of extensions: 336986
Number of successful extensions: 635
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 618
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 635
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1708383636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)