Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc18k13
(726 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY569705-1|AAS86658.1| 419|Apis mellifera complementary sex det... 22 6.8
AF469010-1|AAL93136.1| 678|Apis mellifera cGMP-dependent protei... 22 6.8
AB244761-1|BAE66603.1| 504|Apis mellifera cystathionine beta-sy... 22 6.8
DQ325121-1|ABD14135.1| 181|Apis mellifera complementary sex det... 21 9.0
DQ325120-1|ABD14134.1| 181|Apis mellifera complementary sex det... 21 9.0
DQ325119-1|ABD14133.1| 181|Apis mellifera complementary sex det... 21 9.0
DQ325118-1|ABD14132.1| 181|Apis mellifera complementary sex det... 21 9.0
DQ325117-1|ABD14131.1| 181|Apis mellifera complementary sex det... 21 9.0
DQ325116-1|ABD14130.1| 181|Apis mellifera complementary sex det... 21 9.0
DQ325115-1|ABD14129.1| 185|Apis mellifera complementary sex det... 21 9.0
DQ325114-1|ABD14128.1| 181|Apis mellifera complementary sex det... 21 9.0
>AY569705-1|AAS86658.1| 419|Apis mellifera complementary sex
determiner protein.
Length = 419
Score = 21.8 bits (44), Expect = 6.8
Identities = 8/15 (53%), Positives = 10/15 (66%)
Frame = -3
Query: 46 SNYNRSNLHGNSNIN 2
SNYN N + N+N N
Sbjct: 325 SNYNNYNNYNNNNYN 339
Score = 21.4 bits (43), Expect = 9.0
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = -3
Query: 73 WNHYLNKIRSNYNRSNLHGNSNIN 2
+N+Y N +NYN+ + N IN
Sbjct: 330 YNNYNNNNYNNYNKKLYYKNYIIN 353
>AF469010-1|AAL93136.1| 678|Apis mellifera cGMP-dependent protein
kinase foraging protein.
Length = 678
Score = 21.8 bits (44), Expect = 6.8
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = +2
Query: 548 CSLSNCNDKSKFLNRGAFIA 607
C LSN D+S+ L + A +A
Sbjct: 80 CQLSNKRDRSRELIKAAILA 99
>AB244761-1|BAE66603.1| 504|Apis mellifera cystathionine
beta-synthase protein.
Length = 504
Score = 21.8 bits (44), Expect = 6.8
Identities = 6/15 (40%), Positives = 11/15 (73%)
Frame = +1
Query: 502 DSMSSGLIRPGCLLL 546
D+ GL++PGC ++
Sbjct: 88 DAEDKGLLKPGCTII 102
>DQ325121-1|ABD14135.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 21.4 bits (43), Expect = 9.0
Identities = 7/26 (26%), Positives = 18/26 (69%)
Frame = -2
Query: 503 SHYNSHIRPNFKVIRVFCVIHNFRIP 426
++YN++ N+K ++ + +I+ +IP
Sbjct: 95 NNYNNNYNTNYKKLQYYNIINIEQIP 120
>DQ325120-1|ABD14134.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 21.4 bits (43), Expect = 9.0
Identities = 7/26 (26%), Positives = 18/26 (69%)
Frame = -2
Query: 503 SHYNSHIRPNFKVIRVFCVIHNFRIP 426
++YN++ N+K ++ + +I+ +IP
Sbjct: 95 NNYNNNYNTNYKKLQYYNIINIEQIP 120
>DQ325119-1|ABD14133.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 21.4 bits (43), Expect = 9.0
Identities = 7/26 (26%), Positives = 18/26 (69%)
Frame = -2
Query: 503 SHYNSHIRPNFKVIRVFCVIHNFRIP 426
++YN++ N+K ++ + +I+ +IP
Sbjct: 95 NNYNNNYNTNYKKLQYYNIINIEQIP 120
>DQ325118-1|ABD14132.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 21.4 bits (43), Expect = 9.0
Identities = 7/26 (26%), Positives = 18/26 (69%)
Frame = -2
Query: 503 SHYNSHIRPNFKVIRVFCVIHNFRIP 426
++YN++ N+K ++ + +I+ +IP
Sbjct: 95 NNYNNNYNTNYKKLQYYNIINIEQIP 120
>DQ325117-1|ABD14131.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 21.4 bits (43), Expect = 9.0
Identities = 7/26 (26%), Positives = 18/26 (69%)
Frame = -2
Query: 503 SHYNSHIRPNFKVIRVFCVIHNFRIP 426
++YN++ N+K ++ + +I+ +IP
Sbjct: 95 NNYNNNYNTNYKKLQYYNIINIEQIP 120
>DQ325116-1|ABD14130.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 21.4 bits (43), Expect = 9.0
Identities = 7/26 (26%), Positives = 18/26 (69%)
Frame = -2
Query: 503 SHYNSHIRPNFKVIRVFCVIHNFRIP 426
++YN++ N+K ++ + +I+ +IP
Sbjct: 95 NNYNNNYNTNYKKLQYYNIINIEQIP 120
>DQ325115-1|ABD14129.1| 185|Apis mellifera complementary sex
determiner protein.
Length = 185
Score = 21.4 bits (43), Expect = 9.0
Identities = 7/26 (26%), Positives = 18/26 (69%)
Frame = -2
Query: 503 SHYNSHIRPNFKVIRVFCVIHNFRIP 426
++YN++ N+K ++ + +I+ +IP
Sbjct: 99 NNYNNNYNTNYKKLQYYNIINIEQIP 124
>DQ325114-1|ABD14128.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 21.4 bits (43), Expect = 9.0
Identities = 7/26 (26%), Positives = 18/26 (69%)
Frame = -2
Query: 503 SHYNSHIRPNFKVIRVFCVIHNFRIP 426
++YN++ N+K ++ + +I+ +IP
Sbjct: 95 NNYNNNYNTNYKKLQYYNIINIEQIP 120
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 198,616
Number of Sequences: 438
Number of extensions: 4258
Number of successful extensions: 16
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22535775
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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