Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc18k12
(727 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0926 + 28871800-28871859,28871943-28872336,28872586-288731... 308 4e-84
01_07_0285 - 42476767-42476832,42476990-42477603,42477821-424782... 307 7e-84
05_01_0047 - 323097-323162,323287-323900,324233-324626,324718-32... 306 1e-83
03_06_0585 - 34912159-34912224,34912634-34913247,34913350-349137... 306 1e-83
10_08_0597 + 19089616-19089675,19089789-19090182,19090451-190910... 300 6e-82
01_06_1455 + 37504175-37504231,37504357-37504750,37504865-375054... 299 2e-81
12_01_0409 - 3230853-3230918,3231372-3231994,3232454-3232847,323... 298 3e-81
05_04_0450 - 21356877-21356942,21357482-21358095,21358173-213585... 295 2e-80
11_01_0403 + 3059650-3059709,3059807-3060200,3060275-3060930,306... 289 2e-78
12_02_1282 + 27528159-27529148,27529549-27529614 234 6e-62
03_06_0192 + 32230953-32231030,32231130-32231485,32232250-322324... 122 2e-28
08_01_0254 + 2078380-2078392,2078487-2078578,2079579-2079698,207... 115 4e-26
01_01_1170 - 9318332-9318461,9318551-9318613,9318694-9318744,931... 101 8e-22
08_02_0441 - 17196352-17196536,17196780-17196906,17198018-171981... 95 7e-20
04_04_1515 + 34117383-34117732,34117833-34117918,34118227-341182... 93 3e-19
01_01_0292 - 2387653-2387711,2388061-2388684,2388814-2389104,238... 83 3e-16
08_01_0194 - 1603702-1603782,1603970-1604062,1604203-1604328,160... 77 1e-14
02_04_0473 + 23197294-23197340,23197443-23197680,23197792-231980... 75 8e-14
11_03_0057 + 9375083-9375088,9375904-9376031,9376107-9376166,937... 33 0.31
02_02_0520 + 11152718-11153600,11153736-11153917,11154160-111542... 32 0.53
05_01_0311 + 2452230-2452232,2452401-2452809,2454136-2454263,245... 31 0.70
08_02_0238 + 14665813-14668798,14669088-14669125 29 3.8
07_03_0752 - 21241883-21242233,21242336-21242486,21242586-212428... 29 3.8
03_05_0807 + 27849637-27849823,27850002-27850294,27850736-278509... 29 3.8
07_03_0008 + 12303536-12303893,12303910-12304176,12304635-123049... 29 5.0
01_06_1741 + 39581656-39581680,39582627-39582697,39582779-395828... 28 6.6
01_06_0628 + 30707353-30707548,30707846-30707958,30708090-307081... 28 8.7
>03_05_0926 +
28871800-28871859,28871943-28872336,28872586-28873199,
28873281-28873346
Length = 377
Score = 308 bits (755), Expect = 4e-84
Identities = 141/162 (87%), Positives = 152/162 (93%)
Frame = -3
Query: 725 EKLXYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMEACG 546
EKL Y+ALD++QEM TA +SSS+EKSYELPDGQVITIG ERFRCPE LFQPSF+GMEA G
Sbjct: 216 EKLSYIALDYDQEMETAKTSSSVEKSYELPDGQVITIGAERFRCPEVLFQPSFIGMEAAG 275
Query: 545 IHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPP 366
IHETTYNSIMKCDVDIRKDLY N VLSGGTTM+PGIADRM KEITALAPS+MKIK++APP
Sbjct: 276 IHETTYNSIMKCDVDIRKDLYGNIVLSGGTTMFPGIADRMSKEITALAPSSMKIKVVAPP 335
Query: 365 ERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 240
ERKYSVWIGGSILASLSTFQQMWI+K EYDESGPSIVHRKCF
Sbjct: 336 ERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 377
>01_07_0285 -
42476767-42476832,42476990-42477603,42477821-42478214,
42478301-42478360
Length = 377
Score = 307 bits (753), Expect = 7e-84
Identities = 140/162 (86%), Positives = 152/162 (93%)
Frame = -3
Query: 725 EKLXYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMEACG 546
EKL YVALD+EQE+ TA +SSS+EKSYELPDGQVITIG+ERFRCPE LFQPS +GME+ G
Sbjct: 216 EKLAYVALDYEQELETAKNSSSIEKSYELPDGQVITIGSERFRCPEVLFQPSMIGMESAG 275
Query: 545 IHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPP 366
IHETTYNSIMKCDVDIRKDLY N VLSGGTTM+PGIADRM KEITALAPS+MKIK++APP
Sbjct: 276 IHETTYNSIMKCDVDIRKDLYGNVVLSGGTTMFPGIADRMSKEITALAPSSMKIKVVAPP 335
Query: 365 ERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 240
ERKYSVWIGGSILASLSTFQQMWISK EYDESGP+IVHRKCF
Sbjct: 336 ERKYSVWIGGSILASLSTFQQMWISKDEYDESGPAIVHRKCF 377
>05_01_0047 -
323097-323162,323287-323900,324233-324626,324718-324777
Length = 377
Score = 306 bits (751), Expect = 1e-83
Identities = 141/162 (87%), Positives = 151/162 (93%)
Frame = -3
Query: 725 EKLXYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMEACG 546
EKL YVALD+EQE+ TA +SSS+EKSYELPDGQVITIG ERFRCPE LFQPS +GMEA G
Sbjct: 216 EKLAYVALDYEQELETAKNSSSVEKSYELPDGQVITIGAERFRCPEVLFQPSMIGMEAAG 275
Query: 545 IHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPP 366
IHETTYNSIMKCDVDIRKDLY N VLSGGTTM+PGIADRM KEITALAPS+MKIK++APP
Sbjct: 276 IHETTYNSIMKCDVDIRKDLYGNIVLSGGTTMFPGIADRMSKEITALAPSSMKIKVVAPP 335
Query: 365 ERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 240
ERKYSVWIGGSILASLSTFQQMWISK EYDESGP+IVHRKCF
Sbjct: 336 ERKYSVWIGGSILASLSTFQQMWISKDEYDESGPAIVHRKCF 377
>03_06_0585 -
34912159-34912224,34912634-34913247,34913350-34913734,
34913824-34913883
Length = 374
Score = 306 bits (751), Expect = 1e-83
Identities = 142/162 (87%), Positives = 151/162 (93%)
Frame = -3
Query: 725 EKLXYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMEACG 546
EKL Y+ALD+EQE+ TA SSSS+EKSYELPDGQVITIG ERFRCPE LFQPS +GMEA G
Sbjct: 213 EKLAYIALDYEQELETAKSSSSVEKSYELPDGQVITIGAERFRCPEVLFQPSLIGMEAPG 272
Query: 545 IHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPP 366
IHETTYNSIMKCDVDIRKDLY N VLSGGTTM+PGIADRM KEITALAPS+MKIK++APP
Sbjct: 273 IHETTYNSIMKCDVDIRKDLYGNIVLSGGTTMFPGIADRMSKEITALAPSSMKIKVVAPP 332
Query: 365 ERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 240
ERKYSVWIGGSILASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct: 333 ERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 374
>10_08_0597 +
19089616-19089675,19089789-19090182,19090451-19091064,
19091160-19091225
Length = 377
Score = 300 bits (737), Expect = 6e-82
Identities = 138/162 (85%), Positives = 151/162 (93%)
Frame = -3
Query: 725 EKLXYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMEACG 546
EKL YVALD+EQE+ TA SSSS+EKSYELPDGQVITIG ERFRCPE +FQPS +GMEA G
Sbjct: 216 EKLAYVALDYEQELETAKSSSSVEKSYELPDGQVITIGAERFRCPEVMFQPSLIGMEAPG 275
Query: 545 IHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPP 366
IHETTYNSIMKCDVDIRKDLY N VLSGG+TM+PGIADRM KEITALAPS+MKIK++APP
Sbjct: 276 IHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPP 335
Query: 365 ERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 240
ERKYSVWIGGSILASLSTFQQMWIS+ EY+ESGP+IVHRKCF
Sbjct: 336 ERKYSVWIGGSILASLSTFQQMWISRAEYEESGPAIVHRKCF 377
>01_06_1455 +
37504175-37504231,37504357-37504750,37504865-37505478,
37506021-37506086
Length = 376
Score = 299 bits (733), Expect = 2e-81
Identities = 138/162 (85%), Positives = 147/162 (90%)
Frame = -3
Query: 725 EKLXYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMEACG 546
EKL YVALD+EQE+ TA SSSS+EKSYELPDGQVITIG ERFRCPE LFQPSF+GMEA G
Sbjct: 215 EKLAYVALDYEQELDTARSSSSIEKSYELPDGQVITIGAERFRCPEVLFQPSFIGMEAPG 274
Query: 545 IHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPP 366
IHE TYNSIMKCDVDIRKDLY N VLSGG+TM+PGI DRM KEITALAP +MKIK++APP
Sbjct: 275 IHEATYNSIMKCDVDIRKDLYGNVVLSGGSTMFPGIGDRMSKEITALAPGSMKIKVVAPP 334
Query: 365 ERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 240
ERKYSVWIGGSILASLSTFQQMWISK EYDESGP IVH KCF
Sbjct: 335 ERKYSVWIGGSILASLSTFQQMWISKAEYDESGPGIVHMKCF 376
>12_01_0409 -
3230853-3230918,3231372-3231994,3232454-3232847,
3233000-3233059
Length = 380
Score = 298 bits (731), Expect = 3e-81
Identities = 140/165 (84%), Positives = 151/165 (91%), Gaps = 3/165 (1%)
Frame = -3
Query: 725 EKLXYVALDFEQEM---ATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGME 555
EKL YVALD+EQE+ A A +SSS+EKSYELPDGQVITIG ERFRCPE LFQPS +GME
Sbjct: 216 EKLAYVALDYEQELNAAAAAKNSSSVEKSYELPDGQVITIGAERFRCPEVLFQPSLVGME 275
Query: 554 ACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKII 375
A GIHETTYNSIMKCDVDIRKDLY N VLSGG+TM+PGIADRM KEITALAPS+MKIK++
Sbjct: 276 AAGIHETTYNSIMKCDVDIRKDLYGNVVLSGGSTMFPGIADRMSKEITALAPSSMKIKVV 335
Query: 374 APPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 240
APPERKYSVWIGGSILASLSTFQQMWISK EYDESGP+IVHRKCF
Sbjct: 336 APPERKYSVWIGGSILASLSTFQQMWISKAEYDESGPAIVHRKCF 380
>05_04_0450 -
21356877-21356942,21357482-21358095,21358173-21358566,
21358648-21358704
Length = 376
Score = 295 bits (725), Expect = 2e-80
Identities = 135/162 (83%), Positives = 149/162 (91%)
Frame = -3
Query: 725 EKLXYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMEACG 546
EKL YVALD+EQE+ T+ SSSS+EKSYE+PDGQVITIG+ERFRCPE LFQPS +GME+ G
Sbjct: 215 EKLAYVALDYEQELETSRSSSSVEKSYEMPDGQVITIGSERFRCPEVLFQPSLVGMESPG 274
Query: 545 IHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPP 366
IHE TYNSIMKCDVDIRKDLY N VLSGG+TM+PGIADRM KEIT+LAPS+MK+K+IAPP
Sbjct: 275 IHEATYNSIMKCDVDIRKDLYGNVVLSGGSTMFPGIADRMSKEITSLAPSSMKVKVIAPP 334
Query: 365 ERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 240
ERKYSVWIGGSILASLSTFQQMWISK EYDESGP IVH KCF
Sbjct: 335 ERKYSVWIGGSILASLSTFQQMWISKGEYDESGPGIVHMKCF 376
>11_01_0403 +
3059650-3059709,3059807-3060200,3060275-3060930,
3060979-3061044
Length = 391
Score = 289 bits (709), Expect = 2e-78
Identities = 141/176 (80%), Positives = 151/176 (85%), Gaps = 14/176 (7%)
Frame = -3
Query: 725 EKLXYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMEACG 546
EKL YVALD+EQE+ A SSSS+EKSYELPDGQVITIG ERFRCPE LFQPSF+GMEA G
Sbjct: 216 EKLAYVALDYEQELEAAKSSSSVEKSYELPDGQVITIGAERFRCPEVLFQPSFIGMEAPG 275
Query: 545 IHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPP 366
IHETTYNSIMKCDVDIRKDLY N VLSGG+TM+PGIADRM KEITALAPS+MKIK++APP
Sbjct: 276 IHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPP 335
Query: 365 ERKYSVWIGGSILASLSTFQ--------------QMWISKQEYDESGPSIVHRKCF 240
ERKYSVWIGGSILASLSTFQ QMWISK EYDESGP+IVHRKCF
Sbjct: 336 ERKYSVWIGGSILASLSTFQQVNLTPTLYEVARMQMWISKGEYDESGPAIVHRKCF 391
>12_02_1282 + 27528159-27529148,27529549-27529614
Length = 351
Score = 234 bits (572), Expect = 6e-62
Identities = 119/162 (73%), Positives = 127/162 (78%)
Frame = -3
Query: 725 EKLXYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMEACG 546
EKL Y+ALDF+QEMATAA+ SS+EKSYELPDGQVITIG ERFRCPE LFQPSF+GMEA G
Sbjct: 216 EKLSYIALDFDQEMATAATGSSVEKSYELPDGQVITIGAERFRCPEVLFQPSFVGMEAAG 275
Query: 545 IHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPP 366
IHETTYNSIMKCDVDIRKDLY N VLSGGTTM+PGIADRM KEITALAPS+MKIK
Sbjct: 276 IHETTYNSIMKCDVDIRKDLYGNIVLSGGTTMFPGIADRMSKEITALAPSSMKIK----- 330
Query: 365 ERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 240
MWI+K EYDESGPSIVHRKCF
Sbjct: 331 ---------------------MWIAKAEYDESGPSIVHRKCF 351
>03_06_0192 +
32230953-32231030,32231130-32231485,32232250-32232425,
32233857-32234038,32234260-32234443,32235192-32235259,
32235343-32235495
Length = 398
Score = 122 bits (295), Expect = 2e-28
Identities = 68/159 (42%), Positives = 91/159 (57%), Gaps = 7/159 (4%)
Frame = -3
Query: 695 EQEMATAASSSSLE-KSYELPDGQVITIGNERFRCPEALFQPSFLGMEACGIHETTYNSI 519
E +MA A SS + + LPDGQVITI ER+ EALFQP LG+E GI S+
Sbjct: 241 EDQMAFEAIGSSCRPERHTLPDGQVITIEKERYIVGEALFQPHILGLEDYGIVHQLVTSV 300
Query: 518 MKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPE------RK 357
+ + L NT+L GGT G DR Q+E L+ S + ++ PPE +
Sbjct: 301 SNVTPEYHRQLLENTMLCGGTASMTGFEDRFQREAN-LSASAICPSLVKPPEYMPENLAR 359
Query: 356 YSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 240
YS W+GG+ILA + Q ++K +YDE+GPSIVH+KCF
Sbjct: 360 YSAWLGGAILAKVVFPQNQHVTKGDYDETGPSIVHKKCF 398
>08_01_0254 +
2078380-2078392,2078487-2078578,2079579-2079698,
2079924-2080097,2080184-2080257,2080847-2080927,
2081306-2081366,2081437-2081486,2082278-2082332,
2082599-2082676,2082757-2082810,2083703-2083756,
2083846-2083906,2084229-2084280,2085118-2085184,
2085393-2085452,2085546-2085608,2085752-2085814,
2086337-2086401,2086620-2086688,2086742-2086847
Length = 503
Score = 115 bits (276), Expect = 4e-26
Identities = 58/137 (42%), Positives = 86/137 (62%), Gaps = 14/137 (10%)
Frame = -3
Query: 650 SYELPDGQVITIGNERFRCPEALFQPSFL-----------GMEACGIHETTYNSIMKCDV 504
SYELPDGQ I +G +RF+ P+ LF PS M G+ +S+ +CDV
Sbjct: 333 SYELPDGQTIEVGADRFKIPDILFNPSLSQTIPGVDGFADSMSVRGLPRMVIDSVNRCDV 392
Query: 503 DIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPP---ERKYSVWIGGS 333
DIRK+L ++ +LSGG++ + +R++KE+ + ++K++A ER++SVWIGGS
Sbjct: 393 DIRKELLSSILLSGGSSSILQLKERLEKEVLEESSGNTRVKVLASGNSVERRFSVWIGGS 452
Query: 332 ILASLSTFQQMWISKQE 282
ILASL +FQQMW SK +
Sbjct: 453 ILASLGSFQQMWFSKAD 469
>01_01_1170 -
9318332-9318461,9318551-9318613,9318694-9318744,
9318837-9318921,9319005-9319068,9319139-9319340,
9319808-9320502
Length = 429
Score = 101 bits (241), Expect = 8e-22
Identities = 50/139 (35%), Positives = 76/139 (54%)
Frame = -3
Query: 656 EKSYELPDGQVITIGNERFRCPEALFQPSFLGMEACGIHETTYNSIMKCDVDIRKDLYAN 477
+K EL + + + NERF PE LF P LGM G+ E +I C ++ L+
Sbjct: 291 KKKPELSQNEFV-LTNERFLVPEMLFHPIDLGMNQAGLAECIVRAIQACHPHLQPVLFER 349
Query: 476 TVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMW 297
+L+GG+T++P +R++KE+ L P ++KIIA + W GGS+LA F+ M
Sbjct: 350 IILTGGSTLFPRFTERLEKELRPLVPDDYQVKIIAQEDPILGAWRGGSLLAHRPDFESMC 409
Query: 296 ISKQEYDESGPSIVHRKCF 240
I+K EY+E G R+ F
Sbjct: 410 ITKSEYEEMGSMRCRRRFF 428
>08_02_0441 -
17196352-17196536,17196780-17196906,17198018-17198101,
17198282-17198348,17198575-17198633,17199211-17199336,
17199406-17199474,17199545-17199653,17199692-17199760,
17199876-17199979,17200518-17200567,17200696-17200774,
17200867-17200938,17201083-17201217,17201311-17201421,
17202088-17202129
Length = 495
Score = 94.7 bits (225), Expect = 7e-20
Identities = 54/153 (35%), Positives = 86/153 (56%), Gaps = 25/153 (16%)
Frame = -3
Query: 701 DFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQP--------------SFL 564
D+++E ++ L KSY LPDG+VI +G ERF+ PEALF P +
Sbjct: 238 DYKREYQLGLETTILVKSYTLPDGRVIKVGTERFQAPEALFTPDQYQHNIDKTFVEQELI 297
Query: 563 GMEACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEI------TALA 402
+E G+ + + I + D+D R LY + VLSGG+TMYPG+ R++KE+ L
Sbjct: 298 DVEGDGMADMAFRCIQEMDIDNRMTLYQHIVLSGGSTMYPGLPSRLEKEMLDRYLDVVLK 357
Query: 401 PS-----TMKIKIIAPPERKYSVWIGGSILASL 318
+ ++++I PP RK+ V++GG++LA +
Sbjct: 358 GNKDGLKKLRLRIEDPPRRKHMVYLGGAVLAGI 390
>04_04_1515 +
34117383-34117732,34117833-34117918,34118227-34118297,
34118457-34118524,34118692-34118753,34119010-34119107,
34119545-34119626,34119935-34120077,34120233-34120381,
34120461-34120594,34120714-34120832,34120926-34121014,
34121398-34121515
Length = 522
Score = 92.7 bits (220), Expect = 3e-19
Identities = 56/168 (33%), Positives = 91/168 (54%), Gaps = 10/168 (5%)
Frame = -3
Query: 725 EKLXYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMEACG 546
EKL YVA D+E E + S E+ T+ ERF+ E LFQP G+ A G
Sbjct: 320 EKLCYVAADYEAE-----KRKDTQASCEVDGEGWFTLSEERFKTAEILFQPQIGGVRAMG 374
Query: 545 IHETTYNSIMKC---DVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMK--IK 381
+H+ + C +V + Y VLSGG++ PG+++R++KE+ L P+ + I+
Sbjct: 375 LHKAVSLCMDHCYNSEVFGDDNWYKTVVLSGGSSCLPGLSERLEKELRELLPAHISEGIR 434
Query: 380 IIAPPERKYSVWIGGSILASLSTFQQMW-ISKQEYDE----SGPSIVH 252
+I PP S W G +++++STF + W I K+++ + +GPS V+
Sbjct: 435 VIPPPFGTDSAWFGAKMISNVSTFTEAWCIKKKQFRQKTRRNGPSFVN 482
>01_01_0292 -
2387653-2387711,2388061-2388684,2388814-2389104,
2389338-2389390,2390496-2390968,2391090-2391432,
2391793-2391911,2392081-2392512,2392657-2392747,
2392833-2392942,2393681-2393875,2394581-2394622,
2395144-2395268,2395856-2395926,2396047-2396147
Length = 1042
Score = 82.6 bits (195), Expect = 3e-16
Identities = 41/128 (32%), Positives = 69/128 (53%), Gaps = 2/128 (1%)
Frame = -3
Query: 623 ITIGNERFRCPEALFQPSFLGMEACGIHETTYNSIMKC--DVDIRKDLYANTVLSGGTTM 450
I+IG ERFRCPE LFQP +G++ GI E S+ + D +++ L + +++GG ++
Sbjct: 575 ISIGIERFRCPEILFQPGMIGIDQAGIDEMVSISLRRLMEDEAVKERLCQSILVTGGCSL 634
Query: 449 YPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDES 270
PG+ R++ I P +K++ + W G + A+ S F + S +Y E
Sbjct: 635 IPGMIPRLESGIRQFRPYLSPLKLVRAADPLIDAWRGAAAFAASSKFGRHTFSLADYREH 694
Query: 269 GPSIVHRK 246
G ++ HRK
Sbjct: 695 GENLFHRK 702
>08_01_0194 -
1603702-1603782,1603970-1604062,1604203-1604328,
1604403-1604513,1604989-1605108,1605665-1605757,
1606024-1606157,1606503-1606530,1606821-1607075,
1607167-1607401,1608147-1608193
Length = 440
Score = 77.0 bits (181), Expect = 1e-14
Identities = 44/137 (32%), Positives = 68/137 (49%), Gaps = 15/137 (10%)
Frame = -3
Query: 623 ITIGNERFRCPEALFQPSFLGME-ACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMY 447
I IG ERF PE F P + + + E + + +D R+DLY N VLSGG+TM+
Sbjct: 293 IDIGYERFLGPEIFFHPEIYSADFSTPLPELIDSCVQSAPIDTRRDLYKNIVLSGGSTMF 352
Query: 446 PGIADRMQKEITALAP--------------STMKIKIIAPPERKYSVWIGGSILASLSTF 309
R+Q +I + +++ ++A P + Y+ W GGS+ AS F
Sbjct: 353 KDFHKRLQNDIKKIVDERVAATNARHHVEVKPVEVNVVAHPIQSYAAWFGGSVAASNPEF 412
Query: 308 QQMWISKQEYDESGPSI 258
+ +K+EY+E G SI
Sbjct: 413 YESCHTKEEYEEHGASI 429
>02_04_0473 +
23197294-23197340,23197443-23197680,23197792-23198016,
23198616-23198762,23198827-23198961,23199415-23199507,
23199925-23200044,23200303-23200413,23200486-23200611,
23200731-23200829,23201024-23201104
Length = 473
Score = 74.5 bits (175), Expect = 8e-14
Identities = 43/137 (31%), Positives = 69/137 (50%), Gaps = 17/137 (12%)
Frame = -3
Query: 617 IGNERFRCPEALFQPSFLGME-ACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPG 441
IG ERF PE F P + +H I +D R+ LY N VLSGG+TM+
Sbjct: 326 IGYERFLGPEIFFHPEIYNNDFTTPLHVVIDKCIQSSPIDTRRALYKNIVLSGGSTMFKD 385
Query: 440 IADRMQKEITALAPS----------------TMKIKIIAPPERKYSVWIGGSILASLSTF 309
R+Q+++ + + +++ +++ P ++Y+VW GGS+LAS + F
Sbjct: 386 FHRRLQRDLKKIVDARVLASNARLGGDAKAQPIEVNVVSHPIQRYAVWFGGSVLASTAEF 445
Query: 308 QQMWISKQEYDESGPSI 258
+ +K EY+E G SI
Sbjct: 446 YEACHTKAEYEEYGASI 462
>11_03_0057 +
9375083-9375088,9375904-9376031,9376107-9376166,
9376832-9376892,9377434-9377583,9377667-9377822,
9377905-9378116,9378572-9378673,9378785-9378924,
9379781-9379932
Length = 388
Score = 32.7 bits (71), Expect = 0.31
Identities = 21/75 (28%), Positives = 34/75 (45%)
Frame = -3
Query: 545 IHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPP 366
I E Y I++ ++ ++ T +G MYP D +K+ L K APP
Sbjct: 226 IRELIYRDILEYHPNMLREYLEGTESAG--FMYPSAVDHFKKQFAYLEEHYAKGSTAAPP 283
Query: 365 ERKYSVWIGGSILAS 321
ER+++ S+L S
Sbjct: 284 ERQHNSLPRPSVLYS 298
>02_02_0520 +
11152718-11153600,11153736-11153917,11154160-11154249,
11154343-11154627,11154776-11154994,11155112-11155339
Length = 628
Score = 31.9 bits (69), Expect = 0.53
Identities = 16/40 (40%), Positives = 25/40 (62%), Gaps = 2/40 (5%)
Frame = -3
Query: 695 EQEMATAASSSSLEKSY-ELPDGQ-VITIGNERFRCPEAL 582
E E++ A +K Y +L G+ V+++GNE+FRCP L
Sbjct: 7 ESELSDADIDDYADKCYMDLKSGKPVVSLGNEKFRCPFCL 46
>05_01_0311 +
2452230-2452232,2452401-2452809,2454136-2454263,
2455287-2455436,2455526-2455681,2455775-2455986,
2456306-2456407,2456517-2456653,2456769-2457055
Length = 527
Score = 31.5 bits (68), Expect = 0.70
Identities = 18/65 (27%), Positives = 29/65 (44%)
Frame = -3
Query: 545 IHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPP 366
I E Y I++ + ++ T +G MYP D +K+ L K APP
Sbjct: 321 IRELIYREILEYHPKMLREFLEGTESTG--FMYPSAVDHFKKQFAYLEEHYAKGSTAAPP 378
Query: 365 ERKYS 351
ER+++
Sbjct: 379 ERQHN 383
>08_02_0238 + 14665813-14668798,14669088-14669125
Length = 1007
Score = 29.1 bits (62), Expect = 3.8
Identities = 13/27 (48%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Frame = +3
Query: 336 STDPYGVLPLWRSNDLNLHCRW-GESC 413
S DP G L W+ ND CRW G +C
Sbjct: 62 SNDPGGFLGSWKQNDSIGFCRWPGVTC 88
>07_03_0752 -
21241883-21242233,21242336-21242486,21242586-21242823,
21242917-21243127,21243214-21243344,21245046-21245931,
21246087-21246140,21246397-21246461,21246842-21246892,
21246960-21247029,21247493-21247597
Length = 770
Score = 29.1 bits (62), Expect = 3.8
Identities = 13/24 (54%), Positives = 14/24 (58%)
Frame = +1
Query: 205 RAAGGSDARCV*KHFLCTMEGPDS 276
RAAGG ARC+ LC E P S
Sbjct: 675 RAAGGEIARCIHVGLLCVQENPAS 698
>03_05_0807 +
27849637-27849823,27850002-27850294,27850736-27850973,
27851075-27851410,27851496-27851581,27851678-27851785,
27851878-27852185,27852265-27852528,27852610-27853381
Length = 863
Score = 29.1 bits (62), Expect = 3.8
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = -1
Query: 643 NFPTVRSSLSETKDSVAQRLSSNPRSWVWKLA 548
+ P + +L+ K V SS SWVW+LA
Sbjct: 470 SLPHIEGNLTSAKSKVHTPASSGIESWVWQLA 501
>07_03_0008 +
12303536-12303893,12303910-12304176,12304635-12304951,
12304975-12305819,12305859-12306069
Length = 665
Score = 28.7 bits (61), Expect = 5.0
Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 4/40 (10%)
Frame = +1
Query: 205 RAAGGSDARCV*KHFLCTM----EGPDSSYSCFEIHICWK 312
RA G CV + FLCT+ +G + C E H+ WK
Sbjct: 301 RALGWDKFACVDEPFLCTLLKVGDGVNFRLFCKEYHLSWK 340
>01_06_1741 +
39581656-39581680,39582627-39582697,39582779-39582898,
39583034-39583094,39583186-39583242,39583413-39583600,
39583747-39583818,39583953-39584180
Length = 273
Score = 28.3 bits (60), Expect = 6.6
Identities = 16/61 (26%), Positives = 27/61 (44%)
Frame = -1
Query: 358 STPYGSVDRSSPPSLPSNRCGSRNRSTTSLAPPLYTGSASKRTARRCLQQPAAGCSIQAC 179
+TPY + P +N ++ +A P A KRTA + + +AG + + C
Sbjct: 214 ATPYPAKQAKKTPV--NNDMAKQSSGYVHVATPYPAKQAKKRTANNDMSEHSAGYACKPC 271
Query: 178 N 176
N
Sbjct: 272 N 272
>01_06_0628 +
30707353-30707548,30707846-30707958,30708090-30708197,
30708305-30708543,30708774-30708861,30708942-30709075,
30709285-30709498,30709671-30709759,30710194-30710262,
30710560-30710683
Length = 457
Score = 27.9 bits (59), Expect = 8.7
Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Frame = +3
Query: 594 ATESFVSDSD-DLTVGKFVRLLEGAAGCSGGHFLLEVKSDVXQLL 725
A E F ++D D++VG L AAGC GG + + V Q+L
Sbjct: 262 APELFGCENDIDISVGT----LSKAAGCQGGFIVCRISETVGQIL 302
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,393,039
Number of Sequences: 37544
Number of extensions: 496108
Number of successful extensions: 1617
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 1550
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1604
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1898162308
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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