Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc18k07
         (862 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP19A11.07c ||SPBP4H10.02c|human down-regulated in multiple ca...    31   0.28 
SPAC1705.03c ||SPAC23H4.19|conserved fungal family|Schizosacchar...    29   0.64 
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    28   2.0  
SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces pom...    26   6.0  
SPBC1734.02c |cdc27|SPBC337.18c|DNA polymerase delta subunit Cdc...    26   7.9  
SPBC14F5.08 |med7||mediator complex subunit Med7|Schizosaccharom...    26   7.9  
SPAC9.11 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Ma...    26   7.9  

>SPBP19A11.07c ||SPBP4H10.02c|human down-regulated in multiple
           cancers-1 homolog 2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 676

 Score = 30.7 bits (66), Expect = 0.28
 Identities = 20/78 (25%), Positives = 32/78 (41%)
 Frame = -1

Query: 769 TTTDPVSPSVQYLGGGIHLVKSAPLTKLSPVIDAKMNKSKSGAIYVSFGSSIDTKSFANE 590
           T  +P S     +   +  + + PL   SP+++      K      S  ++ D K   + 
Sbjct: 443 TLENPSSIEYNIISNILFSIPTIPLKNASPIVELISYVMKPEFFMKSQQNASDCKKLLSS 502

Query: 589 FFYMLINTFKALDNYTIL 536
           F Y LIN F   DN  I+
Sbjct: 503 FLYFLINNFN--DNLHII 518


>SPAC1705.03c ||SPAC23H4.19|conserved fungal
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 421

 Score = 29.5 bits (63), Expect = 0.64
 Identities = 29/98 (29%), Positives = 47/98 (47%), Gaps = 2/98 (2%)
 Frame = -1

Query: 796 FC*TYIPYLTTTDPVSPSVQYLGGGIHLVKSAPLTKLS--PVIDAKMNKSKSGAIYVSFG 623
           F   Y P LT+ +   P++  +GGG  ++    LT +   PVI    ++   G + +   
Sbjct: 249 FAVLYSPELTSLN--FPNLTTVGGGF-VINDTGLTSIDGFPVI----SEIGGGLVLLGNF 301

Query: 622 SSIDTKSFANEFFYMLINTFKALDNYTILWKIDDEVVK 509
           SSID    ++    + + T KA  N+T  W  DD V+K
Sbjct: 302 SSIDMPDLSDVKGALTVET-KAT-NFTCPWSNDDSVIK 337


>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1036

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 19/59 (32%), Positives = 25/59 (42%)
 Frame = -1

Query: 772  LTTTDPVSPSVQYLGGGIHLVKSAPLTKLSPVIDAKMNKSKSGAIYVSFGSSIDTKSFA 596
            LTT DP + +  YL  G   V +   T  S   D K   + S   Y S  SS  + + A
Sbjct: 955  LTTIDPTTFTSTYLSSGFQTVSNTTATSGSD-DDVKTASTSSSTSYTSSSSSSSSTTSA 1012


>SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 569

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = -1

Query: 232 ASTYKKHMAELYALINNDKATFPPLDKAIK 143
           A+ Y  H  E     NND+  +PP ++  K
Sbjct: 100 ANRYNSHRPERRRKTNNDRRNYPPQNRTAK 129


>SPBC1734.02c |cdc27|SPBC337.18c|DNA polymerase delta subunit
           Cdc27|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 372

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
 Frame = -1

Query: 298 ALDTVTVSS-DQLLLAINDVLFNASTYKKHMAELYALINNDKATFPPLDKA 149
           AL +  +S  D+LL A+ ++      YKK  A+ Y  I N+ +    L KA
Sbjct: 108 ALSSAPLSDFDELLPAVYEIREKDVLYKKEDADKYGFIFNENSVPRVLKKA 158


>SPBC14F5.08 |med7||mediator complex subunit
           Med7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 376

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 15/67 (22%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
 Frame = -3

Query: 830 QLKNCATKVQLLLLNLHPIFDNNRPXVAQRPVSWRRNPSCK--KCAVDQIKSGHRRENEQ 657
           Q  +    +++LLLNLH + ++ RP  ++  +        K  +  V+ +++ +R+  E 
Sbjct: 252 QFPSKVENIRVLLLNLHHLINDYRPHQSRESLIMLLEKQLKHEESQVELLRTHNRQMTET 311

Query: 656 VKKRSDL 636
           ++K   L
Sbjct: 312 LEKYKSL 318


>SPAC9.11 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 328

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 22/86 (25%), Positives = 44/86 (51%), Gaps = 1/86 (1%)
 Frame = -1

Query: 721 IHLVKSAPLTKLSPVIDAKMNKSKSGAIYVSFGSSIDTKSFANEFFYM-LINTFKALDNY 545
           I L K++ ++KL   +  ++N   +G+I +S  S I +    +EF +  L+N     ++ 
Sbjct: 49  ILLQKASRISKLDEAL-CELNNESNGSIDLSIDSFIPSY---DEFLHKKLLNEDTGHES- 103

Query: 544 TILWKIDDEVVKNITLPANVITQNWF 467
               K+ D+V + I+ P +   + WF
Sbjct: 104 ----KVSDQVKQVISTPMSTCFEQWF 125


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,711,543
Number of Sequences: 5004
Number of extensions: 78325
Number of successful extensions: 206
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 202
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 206
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 428468660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)