Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc18k06
         (681 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    28   1.4  
SPCC1393.05 |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    28   1.4  
SPBC1348.08c |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    27   3.3  
SPAC977.07c |||glycoprotein |Schizosaccharomyces pombe|chr 1|||M...    27   3.3  
SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|...    26   4.4  
SPAC16E8.07c |vph1||V-type ATPase subunit a|Schizosaccharomyces ...    25   7.7  
SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyce...    25   7.7  
SPBC19C2.13c |||conserved eukaryotic protein|Schizosaccharomyces...    25   7.7  

>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
            Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +1

Query: 184  HFWQYVQSVTSWKLCQVIKKNIYS 255
            H WQ +     W LCQV+ + + S
Sbjct: 1604 HLWQKIHESVVWDLCQVLDQELES 1627


>SPCC1393.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 956

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 11/38 (28%), Positives = 21/38 (55%)
 Frame = +1

Query: 10  YYNIRHMNNKVSDYQF*TLFLYNNSAASSKRYVRDKQL 123
           YY I   +N VS Y   +L+L+      S++Y+  +++
Sbjct: 582 YYTILMSSNPVSSYGVGSLYLFQPKIVCSEKYINHEEI 619


>SPBC1348.08c |||glycoprotein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 416

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
 Frame = -1

Query: 594 LSNIYCGCKDICVVIFTDIP--STYPILVSSIIKAF 493
           +++ YC CK I    F  IP   TY ++V+++   F
Sbjct: 271 MASTYCACKVIVYQFFLRIPETDTYTLVVNNVDDVF 306


>SPAC977.07c |||glycoprotein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 416

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
 Frame = -1

Query: 594 LSNIYCGCKDICVVIFTDIP--STYPILVSSIIKAF 493
           +++ YC CK I    F  IP   TY ++V+++   F
Sbjct: 271 MASTYCACKVIVYQFFLRIPETDTYTLVVNNVDDVF 306


>SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1234

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = -1

Query: 606 YNIILSNIYCGCKDICVVIFTDIPSTYPILVSSIIKAFEL 487
           Y IIL N++  CK +  + F D     P+L++ +I    L
Sbjct: 541 YEIILQNLFLWCKQLVEINFKD-----PMLITRLISVLVL 575


>SPAC16E8.07c |vph1||V-type ATPase subunit a|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 805

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +1

Query: 319 IVSYNLVKLEYKLLIDYNEKAFQFESLLMLLI 414
           I  Y ++ + YK  ID+  K  Q  SLL +LI
Sbjct: 570 IFGYLVITIVYKWCIDWKAKDLQPPSLLNMLI 601


>SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1418

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 11/27 (40%), Positives = 18/27 (66%), Gaps = 2/27 (7%)
 Frame = -3

Query: 97  LKMLLSYCKEIKFRI--DNRILYYSYV 23
           L +L++YCK I+FR     R+ Y+ Y+
Sbjct: 303 LSILVNYCKSIRFRCFRCRRVEYFFYL 329


>SPBC19C2.13c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 366

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = -1

Query: 549 FTDIPSTYPILVSSIIKAFELLGVSGNESV 460
           F+ +  T+P LVS+++K    L V   E++
Sbjct: 277 FSSLNDTFPSLVSTVVKMSSKLHVPSTEAI 306


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,723,716
Number of Sequences: 5004
Number of extensions: 55965
Number of successful extensions: 114
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)