Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc18k06
         (681 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0598 + 22621765-22624795,22624903-22625066,22625290-226253...    28   6.0  
02_05_1200 - 34922073-34922273,34922397-34922469,34922976-349230...    28   6.0  

>06_03_0598 + 22621765-22624795,22624903-22625066,22625290-22625328,
            22625479-22625487
          Length = 1080

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 24/70 (34%), Positives = 30/70 (42%), Gaps = 2/70 (2%)
 Frame = -3

Query: 376  FHCNQSTTC--TLASLNCKKQ*IIVYVNKMVSFI*DISYNASSCKYFFLSLGIVSKRSPT 203
            F CN+ T    T  SL C K   I Y+        DIS       +  L L I++ RSPT
Sbjct: 983  FICNRLTANQDTSTSLPCLKG-SIGYIPPEYGMSKDISTKGDVYSFGILLLEIITGRSPT 1041

Query: 202  EHIAKNVITL 173
            + I     TL
Sbjct: 1042 DEIFNGSTTL 1051


>02_05_1200 -
           34922073-34922273,34922397-34922469,34922976-34923019,
           34923107-34923183,34923433-34923529,34923668-34924062,
           34926577-34926620,34926702-34926770,34926856-34926956,
           34927689-34927856,34927940-34928141,34928269-34928708,
           34928786-34928884,34929123-34929263
          Length = 716

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = -2

Query: 197 YCQKCYYTGNGQTLIN*IKKYAIVTSCLSL 108
           +C++  +TGN Q L+  ++K     SC+SL
Sbjct: 167 FCEESLFTGNSQILLKELQKKLDSGSCISL 196


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,625,779
Number of Sequences: 37544
Number of extensions: 292559
Number of successful extensions: 543
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 530
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 543
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1721314888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)