Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc18j22
         (706 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAP27G11.15 |slx1||structure-specific endonuclease catalytic su...    29   0.65 
SPAC23A1.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    27   2.6  
SPAC30C2.02 |mmd1||deoxyhypusine hydroxylase |Schizosaccharomyce...    26   4.6  
SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces...    26   6.0  
SPAC16A10.03c |||zinc finger protein Pep5/Vps11 |Schizosaccharom...    26   6.0  
SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase E3|Schizosac...    25   8.0  

>SPAP27G11.15 |slx1||structure-specific endonuclease catalytic
           subunit |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 271

 Score = 29.1 bits (62), Expect = 0.65
 Identities = 14/60 (23%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
 Frame = -3

Query: 401 ECNV--KAVDSACMRCRRSFAVYPAVTYLHCGHSCLCTDCDETVNVDNTCPKCKSGIRYK 228
           +CN+  + ++S  +R    F    ++ +L C  S   T+  + + ++  C KCK  +R++
Sbjct: 179 KCNLCYECIESDELRANCPFTDCNSINHLTCLASSFLTEECQVLPIEGMCTKCKRVLRWR 238


>SPAC23A1.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 251

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 21/71 (29%), Positives = 31/71 (43%), Gaps = 5/71 (7%)
 Frame = -3

Query: 407 NTECNVKAVDSACMRCRRSFAVYPAVTYLH---CGHS-CLCTDCDETVNVDN-TCPKCKS 243
           + E  V      CM C +      A+T  +   CGH+ C          V+N +CP CK 
Sbjct: 180 SAETTVPQECGLCMMCVQRGDERVAITTPYTTDCGHTYCYACIMSRLKLVNNVSCPICKH 239

Query: 242 GIRYKLKYKTL 210
            IR+ L  +T+
Sbjct: 240 RIRFALPDQTM 250


>SPAC30C2.02 |mmd1||deoxyhypusine hydroxylase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 318

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 14/48 (29%), Positives = 27/48 (56%)
 Frame = -1

Query: 157 AQILNLNLPLAYQKSVLFASNSAKVNERIRRLARDNNERATTPIFTHK 14
           ++I++ NLPL Y+  V+F   +    E +  LA  +  +  +P+F H+
Sbjct: 183 SEIVDQNLPLFYRYRVMFRLRNIGNEEAV--LALTDGFKDPSPLFRHE 228


>SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1639

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = +3

Query: 225  QFISNAAFTFRTRIVHVYRFVAIGAQTRMSAMQI 326
            Q++SN +   RT ++ +   V+   +T+MSA Q+
Sbjct: 996  QYLSNMSHEIRTPLIGITGMVSFLLETQMSAEQL 1029


>SPAC16A10.03c |||zinc finger protein Pep5/Vps11
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 860

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 19/68 (27%), Positives = 29/68 (42%)
 Frame = -3

Query: 443 LEIIKTDRNLPLNTECNVKAVDSACMRCRRSFAVYPAVTYLHCGHSCLCTDCDETVNVDN 264
           +++IK D          ++  +  C  C     V P V+Y  C H  +  DC      + 
Sbjct: 769 IQVIKNDIEKKRQLLGTIQDSEKVCDNCEGLLDV-PFVSY-SCLH-LVHRDCA----TET 821

Query: 263 TCPKCKSG 240
            CPKCK+G
Sbjct: 822 VCPKCKAG 829


>SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase
           E3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 905

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 15/41 (36%), Positives = 20/41 (48%)
 Frame = -1

Query: 142 LNLPLAYQKSVLFASNSAKVNERIRRLARDNNERATTPIFT 20
           ++  L     V  A  S  + ++I RLARD  ER    IFT
Sbjct: 479 MDTELTSMSDVFEAKESKFLEKKILRLARDVIERLDLDIFT 519


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,796,130
Number of Sequences: 5004
Number of extensions: 54984
Number of successful extensions: 162
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)