Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc18j20
(651 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 26 4.1
SPAC2G11.13 |atg22||autophagy associated protein Atg22 |Schizosa... 26 4.1
SPAC1F3.08c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 26 4.1
SPCC576.10c |rpt3||19S proteasome regulatory subunit Rpt3|Schizo... 26 5.4
SPAC343.15 |||tRNA isopentenyltransferase|Schizosaccharomyces po... 26 5.4
SPBC30D10.15 |||snoRNP assembly factor |Schizosaccharomyces pomb... 26 5.4
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po... 25 7.2
SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharo... 25 7.2
SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces pom... 25 9.5
SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18 |Sch... 25 9.5
SPAC11G7.06c |mug132||S. pombe specific UPF0300 family protein 3... 25 9.5
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 26.2 bits (55), Expect = 4.1
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = -1
Query: 564 SNNQPPATAATTIYKSIPGQRPTSMSPAIA*FL*PPI 454
S P +T+A I SIP RP P+++ PPI
Sbjct: 220 SAGTPTSTSAPPIPPSIPSSRPPERVPSLSAPAPPPI 256
>SPAC2G11.13 |atg22||autophagy associated protein Atg22
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 529
Score = 26.2 bits (55), Expect = 4.1
Identities = 7/11 (63%), Positives = 9/11 (81%)
Frame = +1
Query: 538 CRCWWLIVRSP 570
C CWWLI+ +P
Sbjct: 278 CSCWWLILSTP 288
>SPAC1F3.08c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 108
Score = 26.2 bits (55), Expect = 4.1
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = -2
Query: 245 VVNLYYYILFCLLPRLFSHK 186
++ YYY+L CL P F K
Sbjct: 66 IIYYYYYLLICLSPHFFPIK 85
>SPCC576.10c |rpt3||19S proteasome regulatory subunit
Rpt3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 389
Score = 25.8 bits (54), Expect = 5.4
Identities = 10/33 (30%), Positives = 16/33 (48%)
Frame = -3
Query: 628 GGDPPSTPVAYAPPAWSTTPVIEQSTTSNGSNY 530
G DPP + Y PP T +++ S +N+
Sbjct: 164 GIDPPRGVLLYGPPGTGKTMLVKAVANSTAANF 196
>SPAC343.15 |||tRNA isopentenyltransferase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 434
Score = 25.8 bits (54), Expect = 5.4
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = +2
Query: 164 VNGDSLKIYVKTDAVTNRIGYNNTNLLH 247
+N DS++IY D +TN+I +H
Sbjct: 32 INADSMQIYRGFDTITNKITVEEQENVH 59
>SPBC30D10.15 |||snoRNP assembly factor |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 516
Score = 25.8 bits (54), Expect = 5.4
Identities = 16/68 (23%), Positives = 31/68 (45%), Gaps = 4/68 (5%)
Frame = -3
Query: 643 YEQXXGGDPPSTPVAYAPPAWSTTPVIEQST--TSNGSNYHLQEYPWAA--PYVDVSSDS 476
Y+ G +PP+ PP+ S + E S ++ Y+ YP + P+ + +DS
Sbjct: 415 YQTNQGSNPPAKRFTQEPPSSSLYSLSESSINYSTQSPMYYNYNYPQPSFPPFHPIYNDS 474
Query: 475 LVFVAANN 452
+ + + N
Sbjct: 475 IGYYSQAN 482
>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 2812
Score = 25.4 bits (53), Expect = 7.2
Identities = 11/40 (27%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = +2
Query: 128 IKKLHYLRSN-KPVNGDSLKIYVKTDAVTNRIGYNNTNLL 244
+K++ L S K ++ S K+Y + NR+ +NN+ +
Sbjct: 1255 LKEVKELGSTFKSISSTSFKVYSQLTIFANRVSFNNSTAI 1294
>SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1616
Score = 25.4 bits (53), Expect = 7.2
Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = -1
Query: 297 VTSLGSLEFAVPK-TALQCSKFVLLYPILFVTASVFT*IFNE 175
V L SL+ AV T L SKF L + +L + + V T FNE
Sbjct: 1249 VDFLSSLQLAVESLTDLLISKFKLNHLVLELWSDVLTYAFNE 1290
>SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 204
Score = 25.0 bits (52), Expect = 9.5
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = +3
Query: 240 YYTAMPSWGQQTPANPATS 296
YY A P++ Q A PATS
Sbjct: 122 YYPAQPAYAQPVYAQPATS 140
>SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1316
Score = 25.0 bits (52), Expect = 9.5
Identities = 9/25 (36%), Positives = 15/25 (60%)
Frame = +1
Query: 238 FTTLQCRLGDSKLQRTQRRHSSEIC 312
F T+ CR+ D ++Q H +E+C
Sbjct: 179 FETVLCRVCDHEIQNWYFEHHTELC 203
>SPAC11G7.06c |mug132||S. pombe specific UPF0300 family protein
3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 25.0 bits (52), Expect = 9.5
Identities = 18/53 (33%), Positives = 26/53 (49%)
Frame = -1
Query: 306 LTTVTSLGSLEFAVPKTALQCSKFVLLYPILFVTASVFT*IFNESPFTGLLDL 148
L +TS+GS AVP A SK + LYP + F F+ S F + ++
Sbjct: 292 LIMMTSIGSNASAVPVHAYLASKRI-LYPSIIPEEIFFMRKFDSSLFKDIKNI 343
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,312,036
Number of Sequences: 5004
Number of extensions: 42157
Number of successful extensions: 138
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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