Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc18j20
         (651 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    26   0.36 
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   3.4  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   3.4  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    21   7.8  

>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 25.8 bits (54), Expect = 0.36
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = -2

Query: 611 DSCCLCTTSMVYNAGDRTINHQQRQQ 534
           DSCCLC  SM  NA  R  N  + ++
Sbjct: 353 DSCCLCLDSM--NAVIRNFNESENRR 376


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = -3

Query: 619  PPSTPVAYAPPAWSTTPVIEQSTTSNG 539
            PPS PV Y   + S++ ++   +  NG
Sbjct: 1404 PPSAPVLYVTSSTSSSILLHWKSGHNG 1430


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = -3

Query: 619  PPSTPVAYAPPAWSTTPVIEQSTTSNG 539
            PPS PV Y   + S++ ++   +  NG
Sbjct: 1400 PPSAPVLYVTSSTSSSILLHWKSGHNG 1426


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = +1

Query: 247 LQCRLGDSKLQRTQRRHSSEICRCR 321
           L C  GD   ++ ++R ++  CR R
Sbjct: 430 LYCLAGDESFRKRRQREAAGNCRKR 454


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 161,443
Number of Sequences: 438
Number of extensions: 2971
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19682733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)