Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc18j17
         (849 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13G6.09 |||zf-MYND type |Schizosaccharomyces pombe|chr 1|||M...    40   4e-04
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    28   1.5  
SPBC83.11 |||triose phosphate transporter|Schizosaccharomyces po...    27   4.4  
SPBC1703.03c |||armadillo repeat protein, unknown biological rol...    26   5.9  
SPBC1703.12 |ubp9||ubiquitin C-terminal hydrolase Ubp9|Schizosac...    26   7.8  

>SPAC13G6.09 |||zf-MYND type |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 274

 Score = 39.9 bits (89), Expect = 4e-04
 Identities = 16/44 (36%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
 Frame = +3

Query: 162 F*IMPQLLNFLDVGVEL-NSIDWGVLAIYTCKASCNKGSAYMLE 290
           F I+P L++ +++     N++DWG+L+IY C ASC+  +  + E
Sbjct: 214 FQILPTLISSMNIDHSAKNALDWGILSIYVCSASCDLANCGLAE 257


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 17/56 (30%), Positives = 31/56 (55%), Gaps = 4/56 (7%)
 Frame = -3

Query: 802  FNKNRSFFVIII*ISAGAFLASVTGISALIGFSATLST----AKKSDPKYFSKGLH 647
            FN ++++  ++  +   ++L  V+ I +L+  +A LST    +KKS  KYF    H
Sbjct: 1567 FNSSKTYMHLVTLLKERSYLYKVSNIPSLLESAAKLSTTLEDSKKSLLKYFELQRH 1622


>SPBC83.11 |||triose phosphate transporter|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 434

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 15/41 (36%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
 Frame = +3

Query: 411 YVKKSFKPLNSVLD*GGLFFGNVGN-KLPIFTLKSFKSLAP 530
           YV  +  PL S+   GG  FG++   K+P+ T+ + K+L+P
Sbjct: 68  YVLYTTLPL-SIFQIGGHVFGSLATTKIPVSTVHTVKALSP 107


>SPBC1703.03c |||armadillo repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 664

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 16/46 (34%), Positives = 22/46 (47%)
 Frame = +3

Query: 180 LLNFLDVGVELNSIDWGVLAIYTCKASCNKGSAYMLEYMIKQDLSD 317
           LL+ LD   E+    W   AI    ASC +G  Y+L+  +   L D
Sbjct: 40  LLSRLD-NPEIKERSWACSAISNIIASCTEGRLYLLKNGLVSKLID 84


>SPBC1703.12 |ubp9||ubiquitin C-terminal hydrolase
           Ubp9|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 585

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 11/28 (39%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
 Frame = -2

Query: 641 C*AWGRR--CHTCIKSLRMGYTVCCCRY 564
           C A+G +   +TC+K L    + C CRY
Sbjct: 145 CSAYGMKENIYTCLKDLYCSVSCCDCRY 172


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,285,738
Number of Sequences: 5004
Number of extensions: 66491
Number of successful extensions: 131
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 420459900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)