Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc18j17
         (849 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0451 - 22361617-22361811,22362728-22362842,22363443-223635...    53   3e-07
03_02_0701 - 10523053-10523220,10523802-10523916,10524102-105241...    49   4e-06
10_06_0024 - 9733994-9734093,9734814-9734870,9734954-9735040,973...    29   3.5  
05_03_0676 - 16853937-16854042,16854605-16854700,16854920-168550...    29   6.2  

>01_05_0451 -
           22361617-22361811,22362728-22362842,22363443-22363513,
           22363600-22363754,22363843-22363933,22364049-22364104,
           22364910-22365027,22365087-22365200,22365289-22365504
          Length = 376

 Score = 52.8 bits (121), Expect = 3e-07
 Identities = 21/45 (46%), Positives = 32/45 (71%)
 Frame = +3

Query: 162 F*IMPQLLNFLDVGVELNSIDWGVLAIYTCKASCNKGSAYMLEYM 296
           F IMPQLL++  V  E +S+DW  + +YTCK SC++  +YM E++
Sbjct: 311 FQIMPQLLHYFHVENEPDSLDWATIIVYTCKGSCDQNVSYMEEFV 355


>03_02_0701 -
           10523053-10523220,10523802-10523916,10524102-10524172,
           10524263-10524420,10524497-10524590,10524678-10524766,
           10525322-10525419,10525492-10525625,10525714-10525797,
           10525903-10526151
          Length = 419

 Score = 49.2 bits (112), Expect = 4e-06
 Identities = 20/44 (45%), Positives = 29/44 (65%)
 Frame = +3

Query: 162 F*IMPQLLNFLDVGVELNSIDWGVLAIYTCKASCNKGSAYMLEY 293
           F IMPQLL +  V  E +S+DW  + +YTCK SC++  +Y  E+
Sbjct: 363 FQIMPQLLYYFGVKNEPDSLDWATIVVYTCKGSCDQNVSYKEEF 406


>10_06_0024 -
           9733994-9734093,9734814-9734870,9734954-9735040,
           9736438-9736982,9737086-9737271
          Length = 324

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 26/74 (35%), Positives = 34/74 (45%), Gaps = 2/74 (2%)
 Frame = -3

Query: 760 SAGAFLASVTGISALIGFSATLSTAKKSDPKYFSKGLHG--GAELGDAGAILALRALGWG 587
           S  A LASVTG S L G S+ L T      + +  G H   G     A  +LA  A+   
Sbjct: 48  SLAASLASVTGFSLLSGMSSALDTL---CGQAYGAGQHRLLGVYAQRAMLVLAAAAVPIA 104

Query: 586 TLYAVAGTGFLCYG 545
            ++A AG   L +G
Sbjct: 105 LVWASAGEILLLFG 118


>05_03_0676 -
           16853937-16854042,16854605-16854700,16854920-16855089,
           16856742-16856825,16857042-16857119,16858053-16858216,
           16858345-16858429
          Length = 260

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = -2

Query: 617 HTCIKSLRMGYTVCCCRYWFPLLWHLETFW 528
           +TCI S+ +G  V  C+YW  +   L++FW
Sbjct: 110 NTCIISVDIGIFVVLCKYW--VAAKLDSFW 137


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,123,557
Number of Sequences: 37544
Number of extensions: 367259
Number of successful extensions: 797
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 779
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 797
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2362209084
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)