Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc18j17
         (849 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY071552-1|AAL49174.1|  146|Drosophila melanogaster RE61805p pro...   131   1e-30
AE014298-1638|AAF48058.1|  146|Drosophila melanogaster CG11699-P...   131   1e-30
AY113356-1|AAM29361.1|  347|Drosophila melanogaster GM13546p pro...    46   7e-05
AE013599-3824|AAF47170.1|  347|Drosophila melanogaster CG3260-PA...    46   7e-05

>AY071552-1|AAL49174.1|  146|Drosophila melanogaster RE61805p
           protein.
          Length = 146

 Score =  131 bits (317), Expect = 1e-30
 Identities = 67/121 (55%), Positives = 79/121 (65%), Gaps = 1/121 (0%)
 Frame = -3

Query: 763 ISAGAFLASVTGISALIGFSATLSTAKKSDPKYFSK-GLHGGAELGDAGAILALRALGWG 587
           I A AFL  V G+SAL GFS TL+TAKK+D K   + G   G  L D GA LALRALGWG
Sbjct: 21  IQAAAFLGLVGGVSALFGFSRTLATAKKTDSKVLQQAGTRQGMILMDEGATLALRALGWG 80

Query: 586 TLYAVAGTGFLCYGIWKLSGARDLKDFRVKMGXXXXXXXXXXXPQSRTEFSGLNDFLTYV 407
           TLYAV GTG  CYG WKLSGA+D ++FR+KMG           P SRT+F  L D + Y+
Sbjct: 81  TLYAVMGTGAFCYGFWKLSGAKDFQEFRLKMGNALPRITKDEPPASRTDFESLTDLMKYL 140

Query: 406 S 404
           +
Sbjct: 141 A 141


>AE014298-1638|AAF48058.1|  146|Drosophila melanogaster CG11699-PA
           protein.
          Length = 146

 Score =  131 bits (317), Expect = 1e-30
 Identities = 67/121 (55%), Positives = 79/121 (65%), Gaps = 1/121 (0%)
 Frame = -3

Query: 763 ISAGAFLASVTGISALIGFSATLSTAKKSDPKYFSK-GLHGGAELGDAGAILALRALGWG 587
           I A AFL  V G+SAL GFS TL+TAKK+D K   + G   G  L D GA LALRALGWG
Sbjct: 21  IQAAAFLGLVGGVSALFGFSRTLATAKKTDSKVLQQAGTRQGMILMDEGATLALRALGWG 80

Query: 586 TLYAVAGTGFLCYGIWKLSGARDLKDFRVKMGXXXXXXXXXXXPQSRTEFSGLNDFLTYV 407
           TLYAV GTG  CYG WKLSGA+D ++FR+KMG           P SRT+F  L D + Y+
Sbjct: 81  TLYAVMGTGAFCYGFWKLSGAKDFQEFRLKMGNALPRITKDEPPASRTDFESLTDLMKYL 140

Query: 406 S 404
           +
Sbjct: 141 A 141


>AY113356-1|AAM29361.1|  347|Drosophila melanogaster GM13546p
           protein.
          Length = 347

 Score = 46.0 bits (104), Expect = 7e-05
 Identities = 25/50 (50%), Positives = 31/50 (62%)
 Frame = +3

Query: 162 F*IMPQLLNFLDVGVELNSIDWGVLAIYTCKASCNKGSAYMLEYMIKQDL 311
           F IMPQ L  L    E  ++DWGVLA+YTC  SC     Y+ E +IKQD+
Sbjct: 297 FQIMPQALTLL----EDENLDWGVLAVYTCAKSC-PIDGYVEELLIKQDI 341


>AE013599-3824|AAF47170.1|  347|Drosophila melanogaster CG3260-PA
           protein.
          Length = 347

 Score = 46.0 bits (104), Expect = 7e-05
 Identities = 25/50 (50%), Positives = 31/50 (62%)
 Frame = +3

Query: 162 F*IMPQLLNFLDVGVELNSIDWGVLAIYTCKASCNKGSAYMLEYMIKQDL 311
           F IMPQ L  L    E  ++DWGVLA+YTC  SC     Y+ E +IKQD+
Sbjct: 297 FQIMPQALTLL----EDENLDWGVLAVYTCAKSC-PIDGYVEELLIKQDI 341


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 33,401,376
Number of Sequences: 53049
Number of extensions: 675264
Number of successful extensions: 1857
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1778
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1855
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 4065385896
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)