Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc18j17
         (849 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z32683-13|CAA83630.1|  386|Caenorhabditis elegans Hypothetical p...    46   3e-05
U58751-8|AAB00659.2|  635|Caenorhabditis elegans Hypothetical pr...    29   5.5  

>Z32683-13|CAA83630.1|  386|Caenorhabditis elegans Hypothetical
           protein R07E5.10a protein.
          Length = 386

 Score = 46.4 bits (105), Expect = 3e-05
 Identities = 21/48 (43%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
 Frame = +3

Query: 168 IMPQLLNFLDVGVELNSIDWGVLAIYTCKASCN-KGSAYMLEYMIKQD 308
           +MP LL+ +DV     SIDW  + +YTC ASC      Y  E++ KQD
Sbjct: 337 LMPHLLSLIDVDAIGQSIDWASVYVYTCSASCQIADDGYAKEFVAKQD 384


>U58751-8|AAB00659.2|  635|Caenorhabditis elegans Hypothetical
           protein C07G1.2 protein.
          Length = 635

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +2

Query: 518 ISCTRKFPNAIAKETSTCNSIQCTPS*GS*CKYGTCV 628
           +SC R+ PN  +   STC  I+C+    + C  G+C+
Sbjct: 530 LSCLRE-PNCTSTVISTCEPIRCSHCQQAACGDGSCI 565


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,769,721
Number of Sequences: 27780
Number of extensions: 366543
Number of successful extensions: 827
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 796
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 827
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2108493618
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)