Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc18j16
         (685 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3A11.11c |||pyridoxal reductase |Schizosaccharomyces pombe|c...    31   0.20 
SPBC32C12.03c |ppk25||serine/threonine protein kinase Ppk25 |Sch...    27   2.5  
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    27   3.3  
SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces po...    26   4.4  
SPBC16E9.07 |mug100||sequence orphan|Schizosaccharomyces pombe|c...    26   5.8  

>SPAC3A11.11c |||pyridoxal reductase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 334

 Score = 30.7 bits (66), Expect = 0.20
 Identities = 21/50 (42%), Positives = 28/50 (56%), Gaps = 6/50 (12%)
 Frame = -1

Query: 619 CLTFSILFVSFTTFKTVYSINCYQCSGTDSNNPFE----C-NEFLD-GDV 488
           C+T SI  V   T K V +I+ YQC+  D + P E    C  EF+D GD+
Sbjct: 99  CITKSIKTVR-ETLKKVKTIDLYQCAAIDPDTPIEETMACLKEFVDSGDI 147


>SPBC32C12.03c |ppk25||serine/threonine protein kinase Ppk25
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 423

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = +1

Query: 358 KCTFPTPVSKFCCDSCAVKLQTFRRVLCSIE 450
           K  FP+ +S+ CC   A  L    R  CS+E
Sbjct: 267 KLEFPSYISEDCCSLIAAMLNVNPRKRCSLE 297


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 4924

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = -1

Query: 568 YSINCYQCSGTDSNNPFECNEFLDGDVDLVPIDCATIHDAQYC 440
           YS NC +C        F   EF +  ++  P+D A I+D+  C
Sbjct: 879 YSKNCLECI----QKHFTTKEFDEQFLNSGPLDAAVIYDSSNC 917


>SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 432

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 16/44 (36%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
 Frame = +2

Query: 20  NPNLIQ--IQXVKIFYKNXNIEHQVDGYKLYQIWNECTLTFLKY 145
           NP+ +   I  VK    N N E   D YK YQ   +  +  LKY
Sbjct: 3   NPDCLSKAISLVKTAIDNDNAEQYPDAYKYYQSALDYFMMALKY 46


>SPBC16E9.07 |mug100||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 313

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = -1

Query: 604 ILFVSFT-TFKTVYSINCYQCSGTDSNNPFECNE 506
           +L + FT TFK+ +S+N Y  + +  +    CNE
Sbjct: 189 LLVLLFTLTFKSKHSLNAYSLTASQFSGHTVCNE 222


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,657,872
Number of Sequences: 5004
Number of extensions: 54142
Number of successful extensions: 119
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)