Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc18j16
         (685 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0458 - 20995834-20996004,20996404-20997309,20997778-209979...    28   6.0  
01_06_0569 + 30313337-30313650,30314271-30314353,30314763-303148...    28   6.0  

>06_03_0458 -
           20995834-20996004,20996404-20997309,20997778-20997942,
           20998024-20998353,20998471-20998527,20998579-20998692,
           20999220-20999381,20999465-20999527,21001100-21001207,
           21001598-21001675,21001771-21001902
          Length = 761

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +1

Query: 433 VLCSIEHHEL*HNQWVPSQHHRLKTH 510
           +LC+IE  EL    W P ++HR ++H
Sbjct: 285 MLCAIEEDELGFPVWDPRKYHRDRSH 310


>01_06_0569 +
           30313337-30313650,30314271-30314353,30314763-30314876,
           30315876-30315938,30316289-30316380,30316464-30316544,
           30316629-30316727,30316795-30316933,30317017-30317165
          Length = 377

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = -2

Query: 360 FCGISTKRFCSSLDLGNYCDY-VRQRGDKLEYRTCIYT 250
           FCG+ +K+F   +DL  Y    ++ RGD   Y + IYT
Sbjct: 215 FCGMRSKKFNGFIDLDAYDTIAMKLRGDGRCYISTIYT 252


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,446,286
Number of Sequences: 37544
Number of extensions: 294844
Number of successful extensions: 557
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 550
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 557
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1733104716
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)