Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc18j16
         (685 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81076-12|CAB03061.2|  161|Caenorhabditis elegans Hypothetical p...    29   4.1  
Z32683-13|CAA83630.1|  386|Caenorhabditis elegans Hypothetical p...    28   7.1  
AF036695-3|ABD63231.1|  193|Caenorhabditis elegans Hypothetical ...    28   7.1  
U23147-7|AAC46691.1|  596|Caenorhabditis elegans Rapsyn protein ...    27   9.4  
AL110498-7|CAB57909.2|  302|Caenorhabditis elegans Hypothetical ...    27   9.4  

>Z81076-12|CAB03061.2|  161|Caenorhabditis elegans Hypothetical
           protein F35C5.11 protein.
          Length = 161

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
 Frame = -1

Query: 604 ILFVSFTTFKTVYSINCYQCSGTDSNNPFECNEF--LDGDVDLVPIDCATIHDAQYC 440
           ++ ++F T  + Y+I C+QC G +    F  N    L+  VD +  DC     +  C
Sbjct: 8   LIILAFIT-SSAYAIKCHQCGGAEKIPKFAKNALAKLNISVDSLYGDCKKTSGSDMC 63


>Z32683-13|CAA83630.1|  386|Caenorhabditis elegans Hypothetical
           protein R07E5.10a protein.
          Length = 386

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 12/44 (27%), Positives = 18/44 (40%)
 Frame = -2

Query: 366 CTFCGISTKRFCSSLDLGNYCDYVRQRGDKLEYRTCIYTCSTDG 235
           C  CG S  + C+   +  YC    Q  D   ++      +TDG
Sbjct: 146 CRICGCSAAKKCAKCQVARYCSQAHQVIDWPAHKLECAKAATDG 189


>AF036695-3|ABD63231.1|  193|Caenorhabditis elegans Hypothetical
           protein F16B3.3 protein.
          Length = 193

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -1

Query: 601 LFVSFTTFKTVYSINCYQCS 542
           LF +F T+ T ++I CY C+
Sbjct: 16  LFFTFATWHTAHAIKCYSCA 35


>U23147-7|AAC46691.1|  596|Caenorhabditis elegans Rapsyn protein 1
           protein.
          Length = 596

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +3

Query: 207 IHQYLKQNCNHLCYKCRCK 263
           +H YL Q  +  C KCRC+
Sbjct: 402 LHTYLLQRTDQTCPKCRCR 420


>AL110498-7|CAB57909.2|  302|Caenorhabditis elegans Hypothetical
           protein Y64G10A.1 protein.
          Length = 302

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 18/64 (28%), Positives = 28/64 (43%), Gaps = 1/64 (1%)
 Frame = +1

Query: 238 ICATSVDASSIF*FVSP-LSDIITVVAKV**RTESLCAYTTKCTFPTPVSKFCCDSCAVK 414
           +CAT+  A S   +    LSD +   A V   T ++   T  C +P      CC+   V+
Sbjct: 37  VCATTCGACSNLNYTRTCLSDGLKNCACVGEPTTTMLCNTIACNYPRGSEAPCCNGSPVE 96

Query: 415 LQTF 426
           +  F
Sbjct: 97  INNF 100


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,790,190
Number of Sequences: 27780
Number of extensions: 316379
Number of successful extensions: 748
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 729
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 748
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1560745544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)