Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc18j15
(704 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces p... 69 5e-13
SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable element|Schizosa... 69 5e-13
SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyc... 69 5e-13
SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyce... 69 5e-13
SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable element|Schiz... 69 5e-13
SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomy... 69 5e-13
SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyc... 69 5e-13
SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyc... 69 5e-13
SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable element|Schizo... 69 5e-13
SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomy... 69 5e-13
SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable element|Schizos... 69 5e-13
SPBC1734.04 ||SPBC337.20|mannosyltransferase complex subunit, An... 33 0.030
SPBC1703.15c |vps33|SPBC2A9.01c|vacuolar sorting protein Vps33|S... 27 2.6
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces... 26 4.6
SPAC3H8.05c |||conserved fungal protein|Schizosaccharomyces pomb... 26 6.0
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 25 8.0
SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2 |Schizosacch... 25 8.0
SPBPB8B6.03 ||SPAPB8B6.03, SPAPB8B6.03|acetamidase |Schizosaccha... 25 8.0
>SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 69.3 bits (162), Expect = 5e-13
Identities = 44/124 (35%), Positives = 66/124 (53%), Gaps = 7/124 (5%)
Frame = -2
Query: 703 ITLSVDASKNAMGAVIL--HDNQ---PIAYASASLTKSQQNYAQIEKELLSILFGCIKFH 539
I L DAS A+GAV+ HD+ P+ Y SA ++K+Q NY+ +KE+L+I+ +
Sbjct: 708 ILLETDASDVAVGAVLSQKHDDDKYYPVGYYSAKMSKAQLNYSVSDKEMLAIIKSLKHWR 767
Query: 538 QYVYG--RQIKVETDHKPLISMFKKSLQDIPPRLQRIMLRLQPYDLNVVYKSGKYLYIAD 365
Y+ K+ TDH+ LI + RL R L LQ ++ + Y+ G +IAD
Sbjct: 768 HYLESTIEPFKILTDHRNLIGRITNESEPENKRLARWQLFLQDFNFEINYRPGSANHIAD 827
Query: 364 TLSR 353
LSR
Sbjct: 828 ALSR 831
>SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 69.3 bits (162), Expect = 5e-13
Identities = 44/124 (35%), Positives = 66/124 (53%), Gaps = 7/124 (5%)
Frame = -2
Query: 703 ITLSVDASKNAMGAVIL--HDNQ---PIAYASASLTKSQQNYAQIEKELLSILFGCIKFH 539
I L DAS A+GAV+ HD+ P+ Y SA ++K+Q NY+ +KE+L+I+ +
Sbjct: 708 ILLETDASDVAVGAVLSQKHDDDKYYPVGYYSAKMSKAQLNYSVSDKEMLAIIKSLKHWR 767
Query: 538 QYVYG--RQIKVETDHKPLISMFKKSLQDIPPRLQRIMLRLQPYDLNVVYKSGKYLYIAD 365
Y+ K+ TDH+ LI + RL R L LQ ++ + Y+ G +IAD
Sbjct: 768 HYLESTIEPFKILTDHRNLIGRITNESEPENKRLARWQLFLQDFNFEINYRPGSANHIAD 827
Query: 364 TLSR 353
LSR
Sbjct: 828 ALSR 831
>SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 69.3 bits (162), Expect = 5e-13
Identities = 44/124 (35%), Positives = 66/124 (53%), Gaps = 7/124 (5%)
Frame = -2
Query: 703 ITLSVDASKNAMGAVIL--HDNQ---PIAYASASLTKSQQNYAQIEKELLSILFGCIKFH 539
I L DAS A+GAV+ HD+ P+ Y SA ++K+Q NY+ +KE+L+I+ +
Sbjct: 708 ILLETDASDVAVGAVLSQKHDDDKYYPVGYYSAKMSKAQLNYSVSDKEMLAIIKSLKHWR 767
Query: 538 QYVYG--RQIKVETDHKPLISMFKKSLQDIPPRLQRIMLRLQPYDLNVVYKSGKYLYIAD 365
Y+ K+ TDH+ LI + RL R L LQ ++ + Y+ G +IAD
Sbjct: 768 HYLESTIEPFKILTDHRNLIGRITNESEPENKRLARWQLFLQDFNFEINYRPGSANHIAD 827
Query: 364 TLSR 353
LSR
Sbjct: 828 ALSR 831
>SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 69.3 bits (162), Expect = 5e-13
Identities = 44/124 (35%), Positives = 66/124 (53%), Gaps = 7/124 (5%)
Frame = -2
Query: 703 ITLSVDASKNAMGAVIL--HDNQ---PIAYASASLTKSQQNYAQIEKELLSILFGCIKFH 539
I L DAS A+GAV+ HD+ P+ Y SA ++K+Q NY+ +KE+L+I+ +
Sbjct: 708 ILLETDASDVAVGAVLSQKHDDDKYYPVGYYSAKMSKAQLNYSVSDKEMLAIIKSLKHWR 767
Query: 538 QYVYG--RQIKVETDHKPLISMFKKSLQDIPPRLQRIMLRLQPYDLNVVYKSGKYLYIAD 365
Y+ K+ TDH+ LI + RL R L LQ ++ + Y+ G +IAD
Sbjct: 768 HYLESTIEPFKILTDHRNLIGRITNESEPENKRLARWQLFLQDFNFEINYRPGSANHIAD 827
Query: 364 TLSR 353
LSR
Sbjct: 828 ALSR 831
>SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 69.3 bits (162), Expect = 5e-13
Identities = 44/124 (35%), Positives = 66/124 (53%), Gaps = 7/124 (5%)
Frame = -2
Query: 703 ITLSVDASKNAMGAVIL--HDNQ---PIAYASASLTKSQQNYAQIEKELLSILFGCIKFH 539
I L DAS A+GAV+ HD+ P+ Y SA ++K+Q NY+ +KE+L+I+ +
Sbjct: 708 ILLETDASDVAVGAVLSQKHDDDKYYPVGYYSAKMSKAQLNYSVSDKEMLAIIKSLKHWR 767
Query: 538 QYVYG--RQIKVETDHKPLISMFKKSLQDIPPRLQRIMLRLQPYDLNVVYKSGKYLYIAD 365
Y+ K+ TDH+ LI + RL R L LQ ++ + Y+ G +IAD
Sbjct: 768 HYLESTIEPFKILTDHRNLIGRITNESEPENKRLARWQLFLQDFNFEINYRPGSANHIAD 827
Query: 364 TLSR 353
LSR
Sbjct: 828 ALSR 831
>SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 69.3 bits (162), Expect = 5e-13
Identities = 44/124 (35%), Positives = 66/124 (53%), Gaps = 7/124 (5%)
Frame = -2
Query: 703 ITLSVDASKNAMGAVIL--HDNQ---PIAYASASLTKSQQNYAQIEKELLSILFGCIKFH 539
I L DAS A+GAV+ HD+ P+ Y SA ++K+Q NY+ +KE+L+I+ +
Sbjct: 708 ILLETDASDVAVGAVLSQKHDDDKYYPVGYYSAKMSKAQLNYSVSDKEMLAIIKSLKHWR 767
Query: 538 QYVYG--RQIKVETDHKPLISMFKKSLQDIPPRLQRIMLRLQPYDLNVVYKSGKYLYIAD 365
Y+ K+ TDH+ LI + RL R L LQ ++ + Y+ G +IAD
Sbjct: 768 HYLESTIEPFKILTDHRNLIGRITNESEPENKRLARWQLFLQDFNFEINYRPGSANHIAD 827
Query: 364 TLSR 353
LSR
Sbjct: 828 ALSR 831
>SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 69.3 bits (162), Expect = 5e-13
Identities = 44/124 (35%), Positives = 66/124 (53%), Gaps = 7/124 (5%)
Frame = -2
Query: 703 ITLSVDASKNAMGAVIL--HDNQ---PIAYASASLTKSQQNYAQIEKELLSILFGCIKFH 539
I L DAS A+GAV+ HD+ P+ Y SA ++K+Q NY+ +KE+L+I+ +
Sbjct: 708 ILLETDASDVAVGAVLSQKHDDDKYYPVGYYSAKMSKAQLNYSVSDKEMLAIIKSLKHWR 767
Query: 538 QYVYG--RQIKVETDHKPLISMFKKSLQDIPPRLQRIMLRLQPYDLNVVYKSGKYLYIAD 365
Y+ K+ TDH+ LI + RL R L LQ ++ + Y+ G +IAD
Sbjct: 768 HYLESTIEPFKILTDHRNLIGRITNESEPENKRLARWQLFLQDFNFEINYRPGSANHIAD 827
Query: 364 TLSR 353
LSR
Sbjct: 828 ALSR 831
>SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1333
Score = 69.3 bits (162), Expect = 5e-13
Identities = 44/124 (35%), Positives = 66/124 (53%), Gaps = 7/124 (5%)
Frame = -2
Query: 703 ITLSVDASKNAMGAVIL--HDNQ---PIAYASASLTKSQQNYAQIEKELLSILFGCIKFH 539
I L DAS A+GAV+ HD+ P+ Y SA ++K+Q NY+ +KE+L+I+ +
Sbjct: 708 ILLETDASDVAVGAVLSQKHDDDKYYPVGYYSAKMSKAQLNYSVSDKEMLAIIKSLKHWR 767
Query: 538 QYVYG--RQIKVETDHKPLISMFKKSLQDIPPRLQRIMLRLQPYDLNVVYKSGKYLYIAD 365
Y+ K+ TDH+ LI + RL R L LQ ++ + Y+ G +IAD
Sbjct: 768 HYLESTIEPFKILTDHRNLIGRITNESEPENKRLARWQLFLQDFNFEINYRPGSANHIAD 827
Query: 364 TLSR 353
LSR
Sbjct: 828 ALSR 831
>SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 69.3 bits (162), Expect = 5e-13
Identities = 44/124 (35%), Positives = 66/124 (53%), Gaps = 7/124 (5%)
Frame = -2
Query: 703 ITLSVDASKNAMGAVIL--HDNQ---PIAYASASLTKSQQNYAQIEKELLSILFGCIKFH 539
I L DAS A+GAV+ HD+ P+ Y SA ++K+Q NY+ +KE+L+I+ +
Sbjct: 708 ILLETDASDVAVGAVLSQKHDDDKYYPVGYYSAKMSKAQLNYSVSDKEMLAIIKSLKHWR 767
Query: 538 QYVYG--RQIKVETDHKPLISMFKKSLQDIPPRLQRIMLRLQPYDLNVVYKSGKYLYIAD 365
Y+ K+ TDH+ LI + RL R L LQ ++ + Y+ G +IAD
Sbjct: 768 HYLESTIEPFKILTDHRNLIGRITNESEPENKRLARWQLFLQDFNFEINYRPGSANHIAD 827
Query: 364 TLSR 353
LSR
Sbjct: 828 ALSR 831
>SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 69.3 bits (162), Expect = 5e-13
Identities = 44/124 (35%), Positives = 66/124 (53%), Gaps = 7/124 (5%)
Frame = -2
Query: 703 ITLSVDASKNAMGAVIL--HDNQ---PIAYASASLTKSQQNYAQIEKELLSILFGCIKFH 539
I L DAS A+GAV+ HD+ P+ Y SA ++K+Q NY+ +KE+L+I+ +
Sbjct: 708 ILLETDASDVAVGAVLSQKHDDDKYYPVGYYSAKMSKAQLNYSVSDKEMLAIIKSLKHWR 767
Query: 538 QYVYG--RQIKVETDHKPLISMFKKSLQDIPPRLQRIMLRLQPYDLNVVYKSGKYLYIAD 365
Y+ K+ TDH+ LI + RL R L LQ ++ + Y+ G +IAD
Sbjct: 768 HYLESTIEPFKILTDHRNLIGRITNESEPENKRLARWQLFLQDFNFEINYRPGSANHIAD 827
Query: 364 TLSR 353
LSR
Sbjct: 828 ALSR 831
>SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 69.3 bits (162), Expect = 5e-13
Identities = 44/124 (35%), Positives = 66/124 (53%), Gaps = 7/124 (5%)
Frame = -2
Query: 703 ITLSVDASKNAMGAVIL--HDNQ---PIAYASASLTKSQQNYAQIEKELLSILFGCIKFH 539
I L DAS A+GAV+ HD+ P+ Y SA ++K+Q NY+ +KE+L+I+ +
Sbjct: 708 ILLETDASDVAVGAVLSQKHDDDKYYPVGYYSAKMSKAQLNYSVSDKEMLAIIKSLKHWR 767
Query: 538 QYVYG--RQIKVETDHKPLISMFKKSLQDIPPRLQRIMLRLQPYDLNVVYKSGKYLYIAD 365
Y+ K+ TDH+ LI + RL R L LQ ++ + Y+ G +IAD
Sbjct: 768 HYLESTIEPFKILTDHRNLIGRITNESEPENKRLARWQLFLQDFNFEINYRPGSANHIAD 827
Query: 364 TLSR 353
LSR
Sbjct: 828 ALSR 831
>SPBC1734.04 ||SPBC337.20|mannosyltransferase complex subunit, Anp
family |Schizosaccharomyces pombe|chr 2|||Manual
Length = 430
Score = 33.5 bits (73), Expect = 0.030
Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 5/67 (7%)
Frame = -2
Query: 544 FHQYVYGRQIKVETDHKPLISMFKKSLQDI-PPRLQRIML----RLQPYDLNVVYKSGKY 380
+H +VY R + VET ++ + +DI P + R + QPYDLN +S
Sbjct: 213 YHSWVYWRDVDVETAPNTILEDLMRHDKDIIVPNVYRPLPDWLGNEQPYDLNSWAESETA 272
Query: 379 LYIADTL 359
L +ADTL
Sbjct: 273 LQLADTL 279
>SPBC1703.15c |vps33|SPBC2A9.01c|vacuolar sorting protein
Vps33|Schizosaccharomyces pombe|chr 2|||Manual
Length = 592
Score = 27.1 bits (57), Expect = 2.6
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = +3
Query: 522 LPYTYWWNFIQPNKIDKSSFSIC 590
+P YW+N PN I+K + +C
Sbjct: 50 IPQVYWFNENIPNDIEKKTIYLC 72
>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3699
Score = 26.2 bits (55), Expect = 4.6
Identities = 15/46 (32%), Positives = 28/46 (60%)
Frame = -2
Query: 286 VSDLSISQEKLQELQESITNDPTLSKIVFYCQNGWPEHKKSVNQSI 149
+SD S ++E L+ +S+++ PT K+ F C + +KSV+Q +
Sbjct: 2692 ISDWSNNRESLEVAIKSLSDVPTPRKLTFQC---FMTLQKSVSQPL 2734
>SPAC3H8.05c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1073
Score = 25.8 bits (54), Expect = 6.0
Identities = 13/25 (52%), Positives = 19/25 (76%), Gaps = 1/25 (4%)
Frame = -3
Query: 210 KLYFIVKMDGLNIKSQLIS-QLNLI 139
+L FIVK D +N KSQL++ +LN +
Sbjct: 518 ELIFIVKKDLMNFKSQLLTLKLNTL 542
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 25.4 bits (53), Expect = 8.0
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +3
Query: 51 RIKQAENEPRSYTIQSPEGTFRRNLSFKEK 140
++ QAE+ SY SPE T RN + K
Sbjct: 1090 KLFQAEDTKNSYDQTSPEATQERNRTISSK 1119
>SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1318
Score = 25.4 bits (53), Expect = 8.0
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = +3
Query: 474 LNILISGLWSVSTLICLPYTYWWNFIQPNKIDKSSFS 584
+N L+ L S L C+ YW F+ K DK S S
Sbjct: 44 INFLLDRLKENSNLTCVNIGYWQLFLNIWKSDKLSGS 80
>SPBPB8B6.03 ||SPAPB8B6.03, SPAPB8B6.03|acetamidase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 547
Score = 25.4 bits (53), Expect = 8.0
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +1
Query: 298 YVNQYHYLNLIMYYQEEVL 354
YVN Y YLNLI+ +E +
Sbjct: 39 YVNTYEYLNLILPPEENAI 57
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,801,807
Number of Sequences: 5004
Number of extensions: 56800
Number of successful extensions: 177
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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