Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc18j15
         (704 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL353692-3|CAI16236.1| 5596|Homo sapiens MDN1, midasin homolog (...    32   1.7  
AL158813-2|CAI13203.1| 5596|Homo sapiens MDN1, midasin homolog (...    32   1.7  
AL096678-1|CAI42279.1| 5596|Homo sapiens MDN1, midasin homolog (...    32   1.7  
AF503925-1|AAM77722.1| 5596|Homo sapiens midasin protein.              32   1.7  

>AL353692-3|CAI16236.1| 5596|Homo sapiens MDN1, midasin homolog
            (yeast) protein.
          Length = 5596

 Score = 32.3 bits (70), Expect = 1.7
 Identities = 15/47 (31%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
 Frame = -2

Query: 532  VYGRQIKVETDHKPLISMFKKSL-QDIPPRLQRIMLRLQPYDLNVVY 395
            VYG +++ E D K +I++FK     +  P +   + R+ PYD+ + Y
Sbjct: 1976 VYGERMRTEEDKKKVIAVFKDVFGSNSNPYMGTRLFRITPYDVQLGY 2022


>AL158813-2|CAI13203.1| 5596|Homo sapiens MDN1, midasin homolog
            (yeast) protein.
          Length = 5596

 Score = 32.3 bits (70), Expect = 1.7
 Identities = 15/47 (31%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
 Frame = -2

Query: 532  VYGRQIKVETDHKPLISMFKKSL-QDIPPRLQRIMLRLQPYDLNVVY 395
            VYG +++ E D K +I++FK     +  P +   + R+ PYD+ + Y
Sbjct: 1976 VYGERMRTEEDKKKVIAVFKDVFGSNSNPYMGTRLFRITPYDVQLGY 2022


>AL096678-1|CAI42279.1| 5596|Homo sapiens MDN1, midasin homolog
            (yeast) protein.
          Length = 5596

 Score = 32.3 bits (70), Expect = 1.7
 Identities = 15/47 (31%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
 Frame = -2

Query: 532  VYGRQIKVETDHKPLISMFKKSL-QDIPPRLQRIMLRLQPYDLNVVY 395
            VYG +++ E D K +I++FK     +  P +   + R+ PYD+ + Y
Sbjct: 1976 VYGERMRTEEDKKKVIAVFKDVFGSNSNPYMGTRLFRITPYDVQLGY 2022


>AF503925-1|AAM77722.1| 5596|Homo sapiens midasin protein.
          Length = 5596

 Score = 32.3 bits (70), Expect = 1.7
 Identities = 15/47 (31%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
 Frame = -2

Query: 532  VYGRQIKVETDHKPLISMFKKSL-QDIPPRLQRIMLRLQPYDLNVVY 395
            VYG +++ E D K +I++FK     +  P +   + R+ PYD+ + Y
Sbjct: 1976 VYGERMRTEEDKKKVIAVFKDVFGSNSNPYMGTRLFRITPYDVQLGY 2022


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 94,221,637
Number of Sequences: 237096
Number of extensions: 1779977
Number of successful extensions: 6920
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6850
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6920
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8175213644
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)