Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc18j07
(283 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC30B4.02c |||R3H and G-patch domain, unknown biological role|... 32 0.014
SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr 1||... 27 0.38
SPCC126.14 |prp18||U5 snRNP-associated protein Prp18|Schizosacch... 26 1.2
SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit Air1|Schi... 24 3.6
SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor Sp... 23 6.3
SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomy... 23 6.3
SPAC144.15c |cog1||Golgi transport complex subunit Cog1 |Schizos... 23 6.3
SPAC824.05 |vps16||HOPS complex subunit Vps16 |Schizosaccharomyc... 23 6.3
SPAC3A12.03c |mug145||ubiquitin-protein ligase E3 |Schizosacchar... 23 8.3
SPAC513.05 |ams1||alpha-mannosidase |Schizosaccharomyces pombe|c... 23 8.3
SPBP22H7.06 |||nicotinamide riboside kinase |Schizosaccharomyces... 23 8.3
>SPBC30B4.02c |||R3H and G-patch domain, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 695
Score = 32.3 bits (70), Expect = 0.014
Identities = 21/73 (28%), Positives = 35/73 (47%)
Frame = -1
Query: 283 DKDFSLKLKRVINMFLNDEIENDKIYKLVETVDSSNKLSRRQVDFLIHALLNNVSVTFTL 104
D D SL + V N+ +ND+I N+ + +LS D + TFT+
Sbjct: 196 DNDDSLDILNVPNL-VNDDIANNNAAPPPPLAQAQEQLSTENEDEFDIDDTTDKMTTFTM 254
Query: 103 HRFVDDNVLTQDE 65
++F D +VL +D+
Sbjct: 255 NKFADLSVLEEDD 267
Score = 26.6 bits (56), Expect = 0.67
Identities = 16/56 (28%), Positives = 30/56 (53%)
Frame = -1
Query: 283 DKDFSLKLKRVINMFLNDEIENDKIYKLVETVDSSNKLSRRQVDFLIHALLNNVSV 116
D D + L R+ +F+ND + + +K + S R+ V L+HAL N++++
Sbjct: 514 DSD-NASLTRIDKIFINDVYQRMQQFKHSAIEEISLPPCRKYVRRLVHALANDLNL 568
>SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1101
Score = 27.5 bits (58), Expect = 0.38
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +3
Query: 27 SSFVTRKFAKKLSSSCVKTLSSTNLCNVNVTLT 125
SSF+ RKF LSSS ++ L++ N++ T
Sbjct: 858 SSFINRKFGVLLSSSFIQQLNTVENLNLSFNST 890
>SPCC126.14 |prp18||U5 snRNP-associated protein
Prp18|Schizosaccharomyces pombe|chr 3|||Manual
Length = 343
Score = 25.8 bits (54), Expect = 1.2
Identities = 15/39 (38%), Positives = 24/39 (61%), Gaps = 6/39 (15%)
Frame = -1
Query: 232 DEIENDKIYKLVETVD------SSNKLSRRQVDFLIHAL 134
+EIEN+ + K VET+D + K+S++ V FL H +
Sbjct: 164 EEIENELLTKGVETIDFEHATTTKPKVSKQVVAFLQHGI 202
>SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit
Air1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 313
Score = 24.2 bits (50), Expect = 3.6
Identities = 9/18 (50%), Positives = 10/18 (55%)
Frame = +1
Query: 202 VCRFCHFQFHRLKTC*LL 255
VCR CH H TC L+
Sbjct: 150 VCRTCHTDTHTSSTCPLI 167
>SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor
Spt6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1365
Score = 23.4 bits (48), Expect = 6.3
Identities = 9/14 (64%), Positives = 12/14 (85%)
Frame = -1
Query: 100 RFVDDNVLTQDELS 59
RFV+DN L+ +ELS
Sbjct: 480 RFVEDNTLSPEELS 493
>SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1142
Score = 23.4 bits (48), Expect = 6.3
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = -1
Query: 181 SNKLSRRQVDFLIHALLNNVSVTFTLHRFVDDNVL 77
SNKL R+Q+ +H + N + F LH DD ++
Sbjct: 712 SNKL-RKQI---LHLVEQNCLLIFDLHNGTDDTIV 742
>SPAC144.15c |cog1||Golgi transport complex subunit Cog1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 701
Score = 23.4 bits (48), Expect = 6.3
Identities = 19/77 (24%), Positives = 34/77 (44%), Gaps = 3/77 (3%)
Frame = -1
Query: 271 SLKLKRVINMFLNDEIENDKIYKLVETVDSSNKLSRRQVDFLIHALLNNVSVTF---TLH 101
+LKL R + +E K + + + + + + + +V VT TL
Sbjct: 230 TLKLARDFPNEIRSYLEASKNFNIFKEKEILRNICLDECYLKAYFSAEDVKVTTPFETLQ 289
Query: 100 RFVDDNVLTQDELSFLA 50
+F DN+L Q +LSF +
Sbjct: 290 QFDGDNILQQWKLSFFS 306
>SPAC824.05 |vps16||HOPS complex subunit Vps16 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 835
Score = 23.4 bits (48), Expect = 6.3
Identities = 10/33 (30%), Positives = 18/33 (54%)
Frame = -1
Query: 277 DFSLKLKRVINMFLNDEIENDKIYKLVETVDSS 179
DF K + + LN E + K++ET+D++
Sbjct: 536 DFEPLAKHQVMLLLNMEAYEQALKKVIETMDNN 568
>SPAC3A12.03c |mug145||ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 309
Score = 23.0 bits (47), Expect = 8.3
Identities = 7/11 (63%), Positives = 8/11 (72%)
Frame = -2
Query: 114 HLHCIDSWTTT 82
H CID+W TT
Sbjct: 228 HTQCIDTWMTT 238
>SPAC513.05 |ams1||alpha-mannosidase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1077
Score = 23.0 bits (47), Expect = 8.3
Identities = 12/53 (22%), Positives = 25/53 (47%)
Frame = +3
Query: 6 PAIGMLRSSFVTRKFAKKLSSSCVKTLSSTNLCNVNVTLTLFNNACIKKSTCR 164
PA+ + + ++ K+L S+C + + +CN ++ T N + CR
Sbjct: 206 PAMALAYDFLLMQQCVKQLPSNCWQKYKARQICN-DIMNTFHPNDLSTINECR 257
>SPBP22H7.06 |||nicotinamide riboside kinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 230
Score = 23.0 bits (47), Expect = 8.3
Identities = 10/40 (25%), Positives = 22/40 (55%)
Frame = -1
Query: 247 NMFLNDEIENDKIYKLVETVDSSNKLSRRQVDFLIHALLN 128
++F+N ++ + K ++ SS R V + I+++LN
Sbjct: 188 HLFVNGDVTGKLLDKRIQLSPSSKMSVRDNVQWAINSILN 227
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 967,712
Number of Sequences: 5004
Number of extensions: 14383
Number of successful extensions: 49
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 49
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 63619130
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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