Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc18j07
         (283 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_06_0105 - 10790092-10790323,10791092-10791234,10791322-107914...    35   0.008
07_03_0761 - 21314806-21315144,21315267-21315417,21315509-213157...    26   5.2  
03_02_0940 + 12583131-12583280,12583805-12583996,12584185-125843...    26   5.2  
08_01_0114 - 900530-901191,901269-901338,901536-901640,901721-90...    25   6.8  
04_01_0609 + 7966263-7966366,7967945-7968706,7972607-7972851,797...    25   6.8  

>10_06_0105 - 10790092-10790323,10791092-10791234,10791322-10791429,
            10791796-10791903,10793133-10797686,10798347-10798461,
            10799597-10799724,10799843-10800043,10800158-10800227,
            10801233-10801314,10801433-10801556,10801761-10801778
          Length = 1960

 Score = 35.1 bits (77), Expect = 0.008
 Identities = 25/69 (36%), Positives = 37/69 (53%), Gaps = 1/69 (1%)
 Frame = -1

Query: 229  EIENDKIYKLVETVDSSNKLSRRQVDFL-IHALLNNVSVTFTLHRFVDDNVLTQDELSFL 53
            ++  DK   +VE++DSS ++ + Q D L +  LL N      L   VDD   T+DE+  L
Sbjct: 1404 QVGTDKSRDIVESIDSSERVLKYQDDILQLKVLLTN------LEEQVDDLRSTKDEVEIL 1457

Query: 52   ANFLVTKLE 26
               L +KLE
Sbjct: 1458 NMVLKSKLE 1466


>07_03_0761 -
           21314806-21315144,21315267-21315417,21315509-21315746,
           21315873-21316083,21316585-21316715,21317112-21317249,
           21320183-21321071
          Length = 698

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 13/29 (44%), Positives = 16/29 (55%), Gaps = 2/29 (6%)
 Frame = +3

Query: 66  SSCVKTLSST--NLCNVNVTLTLFNNACI 146
           ++CV T   T   LC  N   TLFN+ CI
Sbjct: 116 AACVATAFDTAQQLCAFNKRATLFNDPCI 144


>03_02_0940 +
           12583131-12583280,12583805-12583996,12584185-12584350,
           12584774-12584801,12585525-12585594,12586399-12586435,
           12587760-12588148
          Length = 343

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +3

Query: 30  SFVTRKFAKKLSSSCVKTLSSTNLCNVNVTLTLFNNA 140
           S +   FA  L +SC +    TNL  ++ T   F+NA
Sbjct: 235 SNINAPFAASLRASCPQAGGDTNLAPLDSTPNAFDNA 271


>08_01_0114 -
           900530-901191,901269-901338,901536-901640,901721-901831,
           901912-902016,902245-902391,903273-903354,903445-903786,
           903873-904177,904259-904435,904799-904852,905171-905254,
           905855-905968,906048-906321,907552-907926,908003-908267,
           908352-908538,908615-909052,909895-909966,910037-910630,
           911471-911623,911700-911828,912326-912657,912705-912840,
           913046-913491,913580-915087,915169-915431,915622-915738,
           915844-916014,916743-916845,916930-916988,918360-918461,
           918560-918649,918727-918877,919745-919830,919926-920102,
           920915-920978,921859-922008,923132-923211,923311-923376,
           924540-924747,925502-925575,925761-925848,926140-926312,
           926541-926609,926698-926741,927074-927167,927290-927366,
           927475-927552,927992-928085
          Length = 3314

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -1

Query: 127 NVSVTFTLHRFVDDNVLTQDELSFLANF 44
           + S+ F L  F+D+ VL Q E+SF+  F
Sbjct: 785 DASIVFGLCIFLDEPVLKQLEVSFIVPF 812


>04_01_0609 +
           7966263-7966366,7967945-7968706,7972607-7972851,
           7976940-7977107,7977471-7977734,7977962-7978509
          Length = 696

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = -1

Query: 154 DFLIHALLNNVSVTFTLHRFVDDNVLTQDELSFLANF 44
           D L H  ++N+SV F LH  + D    + E ++ + F
Sbjct: 295 DHLTHWDIDNISVPFVLHWDIKDGPACRPETNYDSPF 331


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,615,309
Number of Sequences: 37544
Number of extensions: 76008
Number of successful extensions: 218
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 217
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 218
length of database: 14,793,348
effective HSP length: 70
effective length of database: 12,165,268
effective search space used: 279801164
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)