Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc18j07
         (283 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY180917-1|AAN87269.1| 2360|Drosophila melanogaster ORF protein.       29   0.88 
AF220353-1|AAF32355.1| 2244|Drosophila melanogaster kinesin-like...    28   1.5  
AE014134-2053|AAF53088.2| 2013|Drosophila melanogaster CG6392-PA...    28   1.5  
BT023521-1|AAY84921.1|  332|Drosophila melanogaster IP09970p pro...    27   3.6  
AE013599-471|AAM71103.1|  296|Drosophila melanogaster CG30495-PA...    27   3.6  
AE013599-2248|AAF58016.1| 1087|Drosophila melanogaster CG3896-PA...    27   4.7  

>AY180917-1|AAN87269.1| 2360|Drosophila melanogaster ORF protein.
          Length = 2360

 Score = 29.1 bits (62), Expect = 0.88
 Identities = 15/30 (50%), Positives = 20/30 (66%)
 Frame = -1

Query: 253  VINMFLNDEIENDKIYKLVETVDSSNKLSR 164
            +IN  LND+I+ D IY+L+E   S  KL R
Sbjct: 1254 LINTVLNDKID-DPIYELIERYSSIEKLIR 1282


>AF220353-1|AAF32355.1| 2244|Drosophila melanogaster kinesin-like
           kinetochore motorprotein CENP-meta protein.
          Length = 2244

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 19/56 (33%), Positives = 30/56 (53%)
 Frame = -1

Query: 229 EIENDKIYKLVETVDSSNKLSRRQVDFLIHALLNNVSVTFTLHRFVDDNVLTQDEL 62
           E+EN     L    ++  K S+ +VD L+ ALL   S   +L + +D+  LT+D L
Sbjct: 599 EVENQVAVGLEFEFEAHKKSSKLRVDDLLSALLEKESTIESLQKSLDN--LTRDVL 652


>AE014134-2053|AAF53088.2| 2013|Drosophila melanogaster CG6392-PA
           protein.
          Length = 2013

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 19/56 (33%), Positives = 30/56 (53%)
 Frame = -1

Query: 229 EIENDKIYKLVETVDSSNKLSRRQVDFLIHALLNNVSVTFTLHRFVDDNVLTQDEL 62
           E+EN     L    ++  K S+ +VD L+ ALL   S   +L + +D+  LT+D L
Sbjct: 599 EVENQVAVGLEFEFEAHKKSSKLRVDDLLSALLEKESTIESLQKSLDN--LTRDVL 652


>BT023521-1|AAY84921.1|  332|Drosophila melanogaster IP09970p
           protein.
          Length = 332

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 18/69 (26%), Positives = 34/69 (49%), Gaps = 7/69 (10%)
 Frame = -1

Query: 199 VETVDSSNKLSR--RQVDFLIHALLNNVSVTFTLHRFVDDNVLTQDELSFLANFLVTK-- 32
           + ++DS  K +   ++   ++H L+NN  V +  HR   +       ++ + +FL+T   
Sbjct: 110 LSSLDSIRKFAENFKKEQRVLHILINNAGVFWEPHRLTKEGFEMHLGVNHIGHFLLTNLL 169

Query: 31  ---LERSIP 14
              LERS P
Sbjct: 170 LGVLERSAP 178


>AE013599-471|AAM71103.1|  296|Drosophila melanogaster CG30495-PA
           protein.
          Length = 296

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 18/69 (26%), Positives = 34/69 (49%), Gaps = 7/69 (10%)
 Frame = -1

Query: 199 VETVDSSNKLSR--RQVDFLIHALLNNVSVTFTLHRFVDDNVLTQDELSFLANFLVTK-- 32
           + ++DS  K +   ++   ++H L+NN  V +  HR   +       ++ + +FL+T   
Sbjct: 74  LSSLDSIRKFAENFKKEQRVLHILINNAGVFWEPHRLTKEGFEMHLGVNHIGHFLLTNLL 133

Query: 31  ---LERSIP 14
              LERS P
Sbjct: 134 LGVLERSAP 142


>AE013599-2248|AAF58016.1| 1087|Drosophila melanogaster CG3896-PA
           protein.
          Length = 1087

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 13/27 (48%), Positives = 20/27 (74%), Gaps = 1/27 (3%)
 Frame = -1

Query: 217 DKIYKLVETVDSSNKLSRRQV-DFLIH 140
           DK+Y+L+E +D SN +S  QV +F+ H
Sbjct: 37  DKLYRLIE-LDGSNLVSTNQVMEFISH 62


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,869,640
Number of Sequences: 53049
Number of extensions: 144647
Number of successful extensions: 509
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 503
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 509
length of database: 24,988,368
effective HSP length: 72
effective length of database: 21,168,840
effective search space used: 444545640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)