Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc18j07
         (283 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL033514-19|CAA22104.1|  696|Caenorhabditis elegans Hypothetical...    29   0.68 
AC006610-3|AAK85449.1|  264|Caenorhabditis elegans Hypothetical ...    29   0.68 
U80027-12|AAC48126.2|  493|Caenorhabditis elegans Hypothetical p...    28   0.90 
Z49867-1|CAA90027.1|  312|Caenorhabditis elegans Hypothetical pr...    27   1.6  
AF100659-8|AAC68966.1|  688|Caenorhabditis elegans Hypothetical ...    27   2.1  
Z30423-4|CAA83013.2| 1234|Caenorhabditis elegans Hypothetical pr...    27   2.7  
Z70753-9|CAA94765.1|  502|Caenorhabditis elegans Hypothetical pr...    26   4.8  
U29536-2|AAA68790.1|  759|Caenorhabditis elegans Brf (transcript...    25   6.3  
AF067220-9|AAC16977.1|  305|Caenorhabditis elegans Hypothetical ...    25   6.3  
Z81475-5|CAH04698.1|  130|Caenorhabditis elegans Hypothetical pr...    25   8.4  
U58086-1|AAC47123.1|  803|Caenorhabditis elegans CUL-4 protein.        25   8.4  
U29536-1|AAA68791.3|  840|Caenorhabditis elegans Cullin protein ...    25   8.4  
AF016446-9|AAC24169.2|  340|Caenorhabditis elegans Hypothetical ...    25   8.4  

>AL033514-19|CAA22104.1|  696|Caenorhabditis elegans Hypothetical
           protein Y75B8A.19 protein.
          Length = 696

 Score = 28.7 bits (61), Expect = 0.68
 Identities = 11/18 (61%), Positives = 15/18 (83%)
 Frame = -1

Query: 253 VINMFLNDEIENDKIYKL 200
           V+ +FLNDE+ NDK+Y L
Sbjct: 206 VVEIFLNDELLNDKLYIL 223


>AC006610-3|AAK85449.1|  264|Caenorhabditis elegans Hypothetical
           protein C30F12.3 protein.
          Length = 264

 Score = 28.7 bits (61), Expect = 0.68
 Identities = 16/43 (37%), Positives = 22/43 (51%)
 Frame = -1

Query: 241 FLNDEIENDKIYKLVETVDSSNKLSRRQVDFLIHALLNNVSVT 113
           F  D+  N+KIYK V TV     L+R ++     AL +  S T
Sbjct: 207 FFRDKRNNEKIYKEVVTVKKIQLLTRMRISLSAEALGSESSHT 249


>U80027-12|AAC48126.2|  493|Caenorhabditis elegans Hypothetical
           protein T28A11.17 protein.
          Length = 493

 Score = 28.3 bits (60), Expect = 0.90
 Identities = 17/47 (36%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
 Frame = +3

Query: 3   TPAIGMLRSSFVTRKFAKKLSSSCVKTLSSTNLCNVNVTLT-LFNNA 140
           TP +G       TR++A K ++S   + +  NL N+N+TLT +F N+
Sbjct: 93  TPTVGSEFFDEATREYATKKNNSEKFSFALENLENLNLTLTNVFYNS 139


>Z49867-1|CAA90027.1|  312|Caenorhabditis elegans Hypothetical
           protein C33D3.3 protein.
          Length = 312

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 10/15 (66%), Positives = 10/15 (66%)
 Frame = +1

Query: 199 LVCRFCHFQFHRLKT 243
           LVCR CH  FH  KT
Sbjct: 162 LVCRNCHLYFHHYKT 176


>AF100659-8|AAC68966.1|  688|Caenorhabditis elegans Hypothetical
           protein F58E2.3 protein.
          Length = 688

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 13/22 (59%), Positives = 19/22 (86%), Gaps = 1/22 (4%)
 Frame = +3

Query: 96  NLCNV-NVTLTLFNNACIKKST 158
           NL NV NV++++F+NA IKK+T
Sbjct: 370 NLINVENVSVSIFDNAGIKKAT 391


>Z30423-4|CAA83013.2| 1234|Caenorhabditis elegans Hypothetical
           protein T20G5.5 protein.
          Length = 1234

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
 Frame = -1

Query: 280 KDFSLKLKRVINMFLNDEIENDKIYKLVETVDSSNKLSRRQVDFLIHALLNN--VSVTFT 107
           +D + +  RV N  +  E+ +  +   V T  + + LSR Q+  +   LLNN  +S    
Sbjct: 437 RDITTEHTRVQNCMIGAEMIDWLLTLFVSTSTTCSSLSRIQMSAIWQVLLNNGLISHIDG 496

Query: 106 LHRFVD 89
            H+F+D
Sbjct: 497 EHQFLD 502


>Z70753-9|CAA94765.1|  502|Caenorhabditis elegans Hypothetical
           protein F40F9.10 protein.
          Length = 502

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 10/31 (32%), Positives = 21/31 (67%)
 Frame = +3

Query: 42  RKFAKKLSSSCVKTLSSTNLCNVNVTLTLFN 134
           R+FAK  + SC + L++ +L ++  ++T+ N
Sbjct: 431 REFAKDCADSCTRFLNNIHLSDLMYSVTVVN 461


>U29536-2|AAA68790.1|  759|Caenorhabditis elegans Brf (transcription
           factor) homologprotein 1 protein.
          Length = 759

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = -1

Query: 223 ENDKIYKLVETVDSSNKLSRRQVDFLIHALLNNV 122
           ENDK+  L ETV  S+ L +   + + + ++N V
Sbjct: 350 ENDKMQTLTETVVESSGLEKGADEMVRNEIINTV 383


>AF067220-9|AAC16977.1|  305|Caenorhabditis elegans Hypothetical
           protein C33E10.2 protein.
          Length = 305

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 16/65 (24%), Positives = 35/65 (53%)
 Frame = -1

Query: 229 EIENDKIYKLVETVDSSNKLSRRQVDFLIHALLNNVSVTFTLHRFVDDNVLTQDELSFLA 50
           E+  + + ++++ V+  N+L+ R+V  ++  +++      ++   VDD  LT   L+   
Sbjct: 20  ELPTEMLTEIIKRVNPINRLALRKVCRILRKIVDENPGVESVTSAVDDLSLTTRNLT--G 77

Query: 49  NFLVT 35
           NF VT
Sbjct: 78  NFCVT 82


>Z81475-5|CAH04698.1|  130|Caenorhabditis elegans Hypothetical
           protein C24H11.9 protein.
          Length = 130

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -1

Query: 244 MFLNDEIENDKIYKLVETVDSSNKL 170
           M  NDE + +K+ +LV  V  SN+L
Sbjct: 84  MIKNDEKQREKVNELVGLVGDSNRL 108


>U58086-1|AAC47123.1|  803|Caenorhabditis elegans CUL-4 protein.
          Length = 803

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = -1

Query: 190 VDSSNKLSRRQVDFLIHALLNNVSVTFTLHRFVDDNVL 77
           VD S +L  +    L+H+   NVS   TL + VD+ ++
Sbjct: 435 VDRSAELISKHFHTLLHSSNKNVSDDTTLDQMVDEAIV 472


>U29536-1|AAA68791.3|  840|Caenorhabditis elegans Cullin protein 4
           protein.
          Length = 840

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = -1

Query: 190 VDSSNKLSRRQVDFLIHALLNNVSVTFTLHRFVDDNVL 77
           VD S +L  +    L+H+   NVS   TL + VD+ ++
Sbjct: 472 VDRSAELISKHFHTLLHSSNKNVSDDTTLDQMVDEAIV 509


>AF016446-9|AAC24169.2|  340|Caenorhabditis elegans Hypothetical
           protein C02E7.10 protein.
          Length = 340

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 14/52 (26%), Positives = 28/52 (53%)
 Frame = -1

Query: 208 YKLVETVDSSNKLSRRQVDFLIHALLNNVSVTFTLHRFVDDNVLTQDELSFL 53
           Y LV  V +S+    +++D +    +NNV +  T+    + ++LT+D   +L
Sbjct: 90  YVLVIAVTTSSLGKMQKLDLITLPGINNVPMFITMLLIRNSSILTEDVRQWL 141


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,354,649
Number of Sequences: 27780
Number of extensions: 81912
Number of successful extensions: 254
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 251
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 254
length of database: 12,740,198
effective HSP length: 69
effective length of database: 10,823,378
effective search space used: 259761072
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)