Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc18i23
         (137 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    19   4.1  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    19   4.1  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    19   7.2  

>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 19.4 bits (38), Expect = 4.1
 Identities = 5/14 (35%), Positives = 9/14 (64%)
 Frame = +2

Query: 95  TXKTCVIYNFNIGI 136
           T  TC++  F +G+
Sbjct: 576 TTVTCILQRFGVGV 589


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 19.4 bits (38), Expect = 4.1
 Identities = 5/14 (35%), Positives = 9/14 (64%)
 Frame = +2

Query: 95  TXKTCVIYNFNIGI 136
           T  TC++  F +G+
Sbjct: 666 TTVTCILQRFGVGV 679


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 18.6 bits (36), Expect = 7.2
 Identities = 6/12 (50%), Positives = 6/12 (50%)
 Frame = -1

Query: 53  CCIREYDDCFVN 18
           CC   Y D F N
Sbjct: 217 CCDEPYPDIFFN 228


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,376
Number of Sequences: 438
Number of extensions: 278
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 26
effective length of database: 134,955
effective search space used:  2564145
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)