Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc18i22
         (819 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|...    29   0.60 
SPBC1685.08 |||histone deacetylase complex subunit Cti6|Schizosa...    29   0.79 
SPCC188.08c |ubp22|ubp5|ubiquitin C-terminal hydrolase Ubp22|Sch...    29   1.0  
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi...    27   3.2  
SPBC25H2.16c |||adaptin|Schizosaccharomyces pombe|chr 2|||Manual       26   5.6  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    26   5.6  
SPAPB1E7.05 |gde1||glycerophosphoryl diester phosphodiesterase G...    26   7.4  

>SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 194

 Score = 29.5 bits (63), Expect = 0.60
 Identities = 17/53 (32%), Positives = 22/53 (41%)
 Frame = -3

Query: 472 HVYSRPAVY*PAVFGSKSKRNRLRRNH*IGQRRHHIQAPCR*QKSHRHSKRHY 314
           H  SR     PA    + ++ R R NH  G  R H        + HRHS  +Y
Sbjct: 121 HSTSRSRSTSPANRHRRKEKERTRSNHRHGSHRRHEPYRTHLSRHHRHSTTNY 173


>SPBC1685.08 |||histone deacetylase complex subunit
           Cti6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 424

 Score = 29.1 bits (62), Expect = 0.79
 Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
 Frame = +1

Query: 307 HTRNGVLNDDA---ISVNGKALECGVGVVRFNGSAVNGSVWIYCQK 435
           HT NG ++D+     S  G+   C  G+V  +  A +G ++I C +
Sbjct: 28  HTPNGSVSDNEENETSSTGEVTRCVCGIVESDDEASDGGLYIQCDQ 73


>SPCC188.08c |ubp22|ubp5|ubiquitin C-terminal hydrolase
           Ubp22|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1108

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -3

Query: 526 CNSSLYG*LLSSADTHHGHVYS 461
           C   LYG L+ S D H+GH Y+
Sbjct: 446 CEYVLYGVLVHSGDLHNGHYYA 467


>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 3071

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = -1

Query: 264  TLSDDCFMREIMEKNNYNTYYKMYDRKLTYVAL 166
            T++D  F++ I+ K  YN YY +YD   T V L
Sbjct: 1615 TVNDFLFLQTILRKI-YNFYYALYDVPTTDVEL 1646


>SPBC25H2.16c |||adaptin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 533

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 14/60 (23%), Positives = 30/60 (50%)
 Frame = -1

Query: 402 GGTIESDNADTTFKRLAVDRNRIVIQNAITCVYLCIDRCGQLYGSKTLSDDCFMREIMEK 223
           GG +  + A    +++  DRN  V   A+  + +C+  CG  +  +  S + F+ E++ +
Sbjct: 39  GGNLPREAAFAIVRKVN-DRNPTVAYLALNLLDICVKNCGYAFRLQIASKE-FLNELVRR 96


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = -2

Query: 737  CAKLMSFFCTRL*TQSNNDSFVFSKLNS-LYE 645
            C K +SFF T + T  N ++ + SK +S +YE
Sbjct: 928  CRKFLSFFKTTILTSGNENNDLKSKFSSDMYE 959


>SPAPB1E7.05 |gde1||glycerophosphoryl diester phosphodiesterase
           Gde1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1076

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 11/19 (57%), Positives = 15/19 (78%)
 Frame = +3

Query: 600 HYDSIHRSRVTSRILLVKR 656
           + DS H +R+ SRILLV+R
Sbjct: 233 YVDSYHSNRLLSRILLVER 251


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,170,159
Number of Sequences: 5004
Number of extensions: 64323
Number of successful extensions: 170
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 170
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 400438000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)