Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc18i22
         (819 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00048-1|AAB53825.2|  425|Caenorhabditis elegans Lethal protein ...    45   6e-05
AJ010553-1|CAA09234.1|  425|Caenorhabditis elegans LET-756 prote...    45   6e-05
U13070-20|AAN63418.1|  641|Caenorhabditis elegans Hypothetical p...    29   4.0  
U13070-18|AAC46635.2|  646|Caenorhabditis elegans Hypothetical p...    29   4.0  
Z50742-5|CAA90618.2|  650|Caenorhabditis elegans Hypothetical pr...    28   7.0  
Z93378-3|CAB07585.3|  749|Caenorhabditis elegans Hypothetical pr...    28   9.2  

>U00048-1|AAB53825.2|  425|Caenorhabditis elegans Lethal protein 756
           protein.
          Length = 425

 Score = 45.2 bits (102), Expect = 6e-05
 Identities = 33/118 (27%), Positives = 54/118 (45%), Gaps = 5/118 (4%)
 Frame = -1

Query: 399 GTIESDNADTTFKRLAVDRNRIVIQNAITCVYLCIDRCGQLYG--SKTLSDDCFMREIME 226
           GT E  +  +  + ++V  + + I+   T  ++C+D  G+LY   S   S +C   E M 
Sbjct: 103 GTKEESSKFSIVEFVSVAMSLVSIRGVETKNFICMDPSGKLYATPSSNYSTECVFLEEMM 162

Query: 225 KNNYNTYYK-MYDRKLT--YVALKNDGTPRKLQISKGRKLGKFSVYAMTLLKRLSFPI 61
           +N YN Y    Y  +    Y+ L+  G PR+   SK R+     +     L RL  P+
Sbjct: 163 ENYYNLYASCAYGDRFNPWYIELRRSGKPRRGPNSKKRRKASHFLVVHHDLDRLRSPV 220


>AJ010553-1|CAA09234.1|  425|Caenorhabditis elegans LET-756 protein
           protein.
          Length = 425

 Score = 45.2 bits (102), Expect = 6e-05
 Identities = 33/118 (27%), Positives = 54/118 (45%), Gaps = 5/118 (4%)
 Frame = -1

Query: 399 GTIESDNADTTFKRLAVDRNRIVIQNAITCVYLCIDRCGQLYG--SKTLSDDCFMREIME 226
           GT E  +  +  + ++V  + + I+   T  ++C+D  G+LY   S   S +C   E M 
Sbjct: 103 GTKEESSKFSIVEFVSVAMSLVSIRGVETKNFICMDPSGKLYATPSSNYSTECVFLEEMM 162

Query: 225 KNNYNTYYK-MYDRKLT--YVALKNDGTPRKLQISKGRKLGKFSVYAMTLLKRLSFPI 61
           +N YN Y    Y  +    Y+ L+  G PR+   SK R+     +     L RL  P+
Sbjct: 163 ENYYNLYASCAYGDRFNPWYIELRRSGKPRRGPNSKKRRKASHFLVVHHDLDRLRSPV 220


>U13070-20|AAN63418.1|  641|Caenorhabditis elegans Hypothetical
           protein F01F1.1c protein.
          Length = 641

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = -1

Query: 570 CYGELKFVMYRLLALVTLASMADCSALLTHIT 475
           C  + +FV YRLL  + + +  D +ALL  +T
Sbjct: 502 CANQAEFVAYRLLYYIAMDNQIDINALLRELT 533


>U13070-18|AAC46635.2|  646|Caenorhabditis elegans Hypothetical
           protein F01F1.1a protein.
          Length = 646

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = -1

Query: 570 CYGELKFVMYRLLALVTLASMADCSALLTHIT 475
           C  + +FV YRLL  + + +  D +ALL  +T
Sbjct: 507 CANQAEFVAYRLLYYIAMDNQIDINALLRELT 538


>Z50742-5|CAA90618.2|  650|Caenorhabditis elegans Hypothetical
           protein K09A11.5 protein.
          Length = 650

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 13/36 (36%), Positives = 16/36 (44%)
 Frame = +3

Query: 336 CDFCQRQGA*MWCRRCPIQWFRRKRFRLDLLPKTAG 443
           C  C R+G  +WC  CP   F  K    D  P+  G
Sbjct: 53  CCICARRGEVLWCHSCPAS-FHIKCLGYDTDPQPNG 87


>Z93378-3|CAB07585.3|  749|Caenorhabditis elegans Hypothetical
           protein F19H8.4 protein.
          Length = 749

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 21/76 (27%), Positives = 29/76 (38%)
 Frame = -1

Query: 258 SDDCFMREIMEKNNYNTYYKMYDRKLTYVALKNDGTPRKLQISKGRKLGKFSVYAMTLLK 79
           S  C MR    +  Y    K   R+   +      TP+  ++S    + K       L K
Sbjct: 98  SSKCVMRA---REQYKVQRKWQPRRPAAIPTTTVKTPKLKKLS----IKKVEAMRKALPK 150

Query: 78  RLSFPIYTSCPNIKNE 31
            L FP  T  P I+NE
Sbjct: 151 ELQFPTATEVPKIRNE 166


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,720,893
Number of Sequences: 27780
Number of extensions: 371531
Number of successful extensions: 887
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 852
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 887
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2019417216
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)