Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc18i21
         (828 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC144.02 |||transcription factor |Schizosaccharomyces pombe|ch...    29   0.61 
SPAC23E2.03c |ste7||meiotic suppressor protein Ste7|Schizosaccha...    27   4.3  
SPBC1685.08 |||histone deacetylase complex subunit Cti6|Schizosa...    26   5.7  
SPAC13F5.05 |||thioredoxin family protein|Schizosaccharomyces po...    26   7.5  
SPBC25B2.07c |mug164||microtubule-associated protein|Schizosacch...    25   9.9  
SPAC16A10.03c |||zinc finger protein Pep5/Vps11 |Schizosaccharom...    25   9.9  

>SPAC144.02 |||transcription factor |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 249

 Score = 29.5 bits (63), Expect = 0.61
 Identities = 26/89 (29%), Positives = 48/89 (53%)
 Frame = -3

Query: 688 VANKMLEAAKHFKIPVYVSEQYPKGLGHTTKDIKLEDAALVYEKTKFSMYTPELQERLKK 509
           VAN M+++A+  +     ++Q   G+G+T +D++    A    KT   MY   LQ+R  +
Sbjct: 153 VANAMVQSAREAR-----AQQQMHGVGNTNEDVENWLDAASMPKTSHDMY--RLQKRKLQ 205

Query: 508 DVPELGSVVLFGIEAHVCIEQTVIDLLSR 422
            V E  +++   +EA   +E+ +ID  +R
Sbjct: 206 WVKEERTMLANHLEA---LERKLIDARNR 231


>SPAC23E2.03c |ste7||meiotic suppressor protein
           Ste7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 569

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
 Frame = +3

Query: 390 TPSASTCTAISRLNKSMTVCSIHT*ASIPNKTTEPNSG-TSFFKRSCNSGVYIENLVFSY 566
           T S++T T+    + S +V S+HT   +PN   + NS  T+    S +   ++    FS 
Sbjct: 198 TTSSATHTSQFSTSSSSSVNSVHTPVMVPNPYFQYNSSMTAPSSSSSSVAPFVPRRQFSV 257

Query: 567 TKAA 578
           + A+
Sbjct: 258 SSAS 261


>SPBC1685.08 |||histone deacetylase complex subunit
           Cti6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 424

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = -2

Query: 488 RCLVWN*GSCVYRANSH*FVESRYCSTC 405
           +C VW  G+CV  A+     E  YC  C
Sbjct: 73  QCSVWQHGNCVGFADESEVPEVYYCEIC 100


>SPAC13F5.05 |||thioredoxin family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 363

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +3

Query: 492 PNSGTSFFKRSCNSGVYIENL 554
           PN+GTSFF  S N    +E L
Sbjct: 225 PNNGTSFFSNSLNRDSIVEFL 245


>SPBC25B2.07c |mug164||microtubule-associated
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 501

 Score = 25.4 bits (53), Expect = 9.9
 Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
 Frame = +1

Query: 478 TRQRSPIQERPSSSVL--ATQGCTSKTWSFRIL 570
           +R R+ I ERPSSS+L       TS ++S + L
Sbjct: 418 SRSRATIHERPSSSILHRHAHSLTSSSFSTKTL 450


>SPAC16A10.03c |||zinc finger protein Pep5/Vps11
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 860

 Score = 25.4 bits (53), Expect = 9.9
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = +2

Query: 419 ISTQQINDCLLYTHMSLNSKQDN 487
           +S +Q+ D LLY+H+SL   QD+
Sbjct: 647 VSWKQVTD-LLYSHLSLKEGQDD 668


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,098,864
Number of Sequences: 5004
Number of extensions: 62928
Number of successful extensions: 175
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 175
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 406444570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)