Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc18i21
(828 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC014105-1|AAH14105.2| 235|Homo sapiens ISOC1 protein protein. 194 3e-49
BC008367-1|AAH08367.1| 235|Homo sapiens ISOC1 protein protein. 194 3e-49
AF151869-1|AAD34106.1| 199|Homo sapiens CGI-111 protein protein. 157 5e-38
BC017344-1|AAH17344.1| 205|Homo sapiens ISOC2 protein protein. 149 9e-36
CR457377-1|CAG33658.1| 221|Homo sapiens FLJ23469 protein. 135 2e-31
AK027122-1|BAB15666.1| 221|Homo sapiens protein ( Homo sapiens ... 135 2e-31
AK097280-1|BAC04990.1| 127|Homo sapiens protein ( Homo sapiens ... 31 5.1
>BC014105-1|AAH14105.2| 235|Homo sapiens ISOC1 protein protein.
Length = 235
Score = 194 bits (473), Expect = 3e-49
Identities = 94/189 (49%), Positives = 129/189 (68%)
Frame = -3
Query: 784 LGALEAKNTAFLLCDIQETFRPHVKHFGEVVKVANKMLEAAKHFKIPVYVSEQYPKGLGH 605
LG L +T F CD+QE FRP +K+FG+++ V ++L+ A+ IPV V+EQYPKGLG
Sbjct: 44 LGNLTPSSTVFFCCDMQERFRPAIKYFGDIISVGQRLLQGARILGIPVIVTEQYPKGLGS 103
Query: 604 TTKDIKLEDAALVYEKTKFSMYTPELQERLKKDVPELGSVVLFGIEAHVCIEQTVIDLLS 425
T ++I L LV KTKFSM PE++ L ++P + SVVLFG+E HVCI+QT ++L+
Sbjct: 104 TVQEIDLTGVKLVLPKTKFSMVLPEVEAALA-EIPGVRSVVLFGVETHVCIQQTALELVG 162
Query: 424 RDIAVHVLADGVSSRSLMDRGLALQRLQSIGCFVGTSENVLFKLLKDKNHPAFKQISKLN 245
R + VH++AD SSRS+MDR AL+RL G V TSE VL +L+ DK+HP FK+I L
Sbjct: 163 RGVEVHIVADATSSRSMMDRMFALERLARTGIIVTTSEAVLLQLVADKDHPKFKEIQNL- 221
Query: 244 VTPTAHEFG 218
+ +A E G
Sbjct: 222 IKASAPESG 230
>BC008367-1|AAH08367.1| 235|Homo sapiens ISOC1 protein protein.
Length = 235
Score = 194 bits (473), Expect = 3e-49
Identities = 94/189 (49%), Positives = 129/189 (68%)
Frame = -3
Query: 784 LGALEAKNTAFLLCDIQETFRPHVKHFGEVVKVANKMLEAAKHFKIPVYVSEQYPKGLGH 605
LG L +T F CD+QE FRP +K+FG+++ V ++L+ A+ IPV V+EQYPKGLG
Sbjct: 44 LGNLTPSSTVFFCCDMQERFRPAIKYFGDIISVGQRLLQGARILGIPVIVTEQYPKGLGS 103
Query: 604 TTKDIKLEDAALVYEKTKFSMYTPELQERLKKDVPELGSVVLFGIEAHVCIEQTVIDLLS 425
T ++I L LV KTKFSM PE++ L ++P + SVVLFG+E HVCI+QT ++L+
Sbjct: 104 TVQEIDLTGVKLVLPKTKFSMVLPEVEAALA-EIPGVRSVVLFGVETHVCIQQTALELVG 162
Query: 424 RDIAVHVLADGVSSRSLMDRGLALQRLQSIGCFVGTSENVLFKLLKDKNHPAFKQISKLN 245
R + VH++AD SSRS+MDR AL+RL G V TSE VL +L+ DK+HP FK+I L
Sbjct: 163 RGVEVHIVADATSSRSMMDRMFALERLARTGIIVTTSEAVLLQLVADKDHPKFKEIQNL- 221
Query: 244 VTPTAHEFG 218
+ +A E G
Sbjct: 222 IKASAPESG 230
>AF151869-1|AAD34106.1| 199|Homo sapiens CGI-111 protein protein.
Length = 199
Score = 157 bits (381), Expect = 5e-38
Identities = 74/151 (49%), Positives = 103/151 (68%)
Frame = -3
Query: 784 LGALEAKNTAFLLCDIQETFRPHVKHFGEVVKVANKMLEAAKHFKIPVYVSEQYPKGLGH 605
LG L +T F CD+QE FRP +K+FG+++ V ++L+ A+ IPV V+EQYPKGLG
Sbjct: 44 LGNLTPSSTVFFCCDMQERFRPAIKYFGDIISVGQRLLQGARILGIPVIVTEQYPKGLGS 103
Query: 604 TTKDIKLEDAALVYEKTKFSMYTPELQERLKKDVPELGSVVLFGIEAHVCIEQTVIDLLS 425
T ++I L LV KTKFSM PE++ L ++P + SVVLFG+E HVCI+QT ++L+
Sbjct: 104 TVQEIDLTGVKLVLPKTKFSMVLPEVEAAL-AEIPGVRSVVLFGVETHVCIQQTALELVG 162
Query: 424 RDIAVHVLADGVSSRSLMDRGLALQRLQSIG 332
R + VH++AD SSRS+MDR A +S G
Sbjct: 163 RGVEVHIVADATSSRSMMDRMFARLTSRSNG 193
>BC017344-1|AAH17344.1| 205|Homo sapiens ISOC2 protein protein.
Length = 205
Score = 149 bits (362), Expect = 9e-36
Identities = 80/183 (43%), Positives = 116/183 (63%)
Frame = -3
Query: 784 LGALEAKNTAFLLCDIQETFRPHVKHFGEVVKVANKMLEAAKHFKIPVYVSEQYPKGLGH 605
LG + ++ LCD+QE FR ++ +F ++V VA +ML+ A+ ++PV ++EQYP+GLG
Sbjct: 8 LGRVLPGSSVLFLCDMQEKFRHNIAYFPQIVSVAARMLKVARLLEVPVMLTEQYPQGLGP 67
Query: 604 TTKDIKLEDAALVYEKTKFSMYTPELQERLKKDVPELGSVVLFGIEAHVCIEQTVIDLLS 425
T ++ E + KT FSM P LQ+ L P+L SV+L GIEA CI T +DLL
Sbjct: 68 TVPELGTEGLRPL-AKTCFSM-VPALQQELDSR-PQLRSVLLCGIEAQACILNTTLDLLD 124
Query: 424 RDIAVHVLADGVSSRSLMDRGLALQRLQSIGCFVGTSENVLFKLLKDKNHPAFKQISKLN 245
R + VHV+ D SSRS +DR +AL R++ G F+ TSE ++ +L+ D HP FK+I KL
Sbjct: 125 RGLQVHVVVDACSSRSQVDRLVALARMRQSGAFLSTSEGLILQLVGDAVHPQFKEIQKLI 184
Query: 244 VTP 236
P
Sbjct: 185 KEP 187
>CR457377-1|CAG33658.1| 221|Homo sapiens FLJ23469 protein.
Length = 221
Score = 135 bits (326), Expect = 2e-31
Identities = 80/199 (40%), Positives = 117/199 (58%), Gaps = 16/199 (8%)
Frame = -3
Query: 784 LGALEAKNTAFLLCDIQETFRPHVKHFGEVVKVANKMLEAAKHFKIPVYVSEQYPKGLGH 605
LG + ++ LCD+QE FR ++ +F ++V VA +ML+ A+ ++PV ++EQYP+GLG
Sbjct: 8 LGRVLPGSSVLFLCDMQEKFRHNIAYFPQIVSVAARMLKVARLLEVPVMLTEQYPQGLGP 67
Query: 604 TTKDIKLEDAALVYEKTKFSMYTPELQERLKKDVPELGSVVLFGIEAHVCI--------- 452
T ++ E + KT FSM P LQ+ L P+L SV+L GIEA CI
Sbjct: 68 TVPELGTEGLRPL-AKTCFSM-VPALQQELDSR-PQLRSVLLCGIEAQACILDPRSYPGL 124
Query: 451 -------EQTVIDLLSRDIAVHVLADGVSSRSLMDRGLALQRLQSIGCFVGTSENVLFKL 293
+ T +DLL R + VHV+ D SSRS +DR +AL R++ G F+ TSE ++ +L
Sbjct: 125 ALTSLYPQNTTLDLLDRGLQVHVVVDACSSRSQVDRLVALARMRQSGAFLSTSEGLILQL 184
Query: 292 LKDKNHPAFKQISKLNVTP 236
+ D HP FK+I KL P
Sbjct: 185 VGDAVHPQFKEIQKLIKEP 203
>AK027122-1|BAB15666.1| 221|Homo sapiens protein ( Homo sapiens
cDNA: FLJ23469 fis, clone HSI11914. ).
Length = 221
Score = 135 bits (326), Expect = 2e-31
Identities = 80/199 (40%), Positives = 117/199 (58%), Gaps = 16/199 (8%)
Frame = -3
Query: 784 LGALEAKNTAFLLCDIQETFRPHVKHFGEVVKVANKMLEAAKHFKIPVYVSEQYPKGLGH 605
LG + ++ LCD+QE FR ++ +F ++V VA +ML+ A+ ++PV ++EQYP+GLG
Sbjct: 8 LGRVLPGSSVLFLCDMQEKFRHNIAYFPQIVSVAARMLKVARLLEVPVMLTEQYPQGLGP 67
Query: 604 TTKDIKLEDAALVYEKTKFSMYTPELQERLKKDVPELGSVVLFGIEAHVCI--------- 452
T ++ E + KT FSM P LQ+ L P+L SV+L GIEA CI
Sbjct: 68 TVPELGTEGLRPL-AKTCFSM-VPALQQELDSR-PQLRSVLLCGIEAQACILDPRSYPGL 124
Query: 451 -------EQTVIDLLSRDIAVHVLADGVSSRSLMDRGLALQRLQSIGCFVGTSENVLFKL 293
+ T +DLL R + VHV+ D SSRS +DR +AL R++ G F+ TSE ++ +L
Sbjct: 125 ALTSLYPQNTTLDLLDRGLQVHVVVDACSSRSQVDRLVALARMRQSGAFLSTSEGLILQL 184
Query: 292 LKDKNHPAFKQISKLNVTP 236
+ D HP FK+I KL P
Sbjct: 185 VGDAVHPQFKEIQKLIKEP 203
>AK097280-1|BAC04990.1| 127|Homo sapiens protein ( Homo sapiens
cDNA FLJ39961 fis, clone SPLEN2026144. ).
Length = 127
Score = 31.1 bits (67), Expect = 5.1
Identities = 11/30 (36%), Positives = 20/30 (66%)
Frame = -3
Query: 346 LQSIGCFVGTSENVLFKLLKDKNHPAFKQI 257
++ G F+ TSE ++ +L+ D HP FK++
Sbjct: 1 MRQSGAFLSTSEGLILQLVGDAVHPQFKEV 30
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 100,615,829
Number of Sequences: 237096
Number of extensions: 1977236
Number of successful extensions: 3591
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3508
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3585
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10370898348
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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