Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc18i18
         (783 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    31   0.19 
SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei...    28   1.3  
SPBC8D2.15 |||mitochondrial lipoic acid synthetase |Schizosaccha...    27   3.0  
SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyc...    27   3.0  
SPBC2D10.04 |||arrestin Aly1 related|Schizosaccharomyces pombe|c...    27   4.0  
SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog |Schi...    27   4.0  
SPAC4D7.02c |||glycerophosphoryl diester phosphodiesterase |Schi...    26   7.0  
SPAC22G7.05 |||krr family protein|Schizosaccharomyces pombe|chr ...    25   9.3  

>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 674

 Score = 31.1 bits (67), Expect = 0.19
 Identities = 24/90 (26%), Positives = 38/90 (42%), Gaps = 7/90 (7%)
 Frame = -2

Query: 776 DIEELFGDVGGMVESRLV-RPGTAE------VIYKTQEDAQRAVDLYHNRQLDGQPMNCL 618
           D+   F DVG +  + +V  P T E      V +   EDAQRA     N++L G+ +   
Sbjct: 20  DLTNFFSDVGPIKHAVVVTNPETGENRGYGFVTFSMLEDAQRAAKELKNKKLHGRILRLD 79

Query: 617 LVVPRTLNSSSRNNSKPALYSTNSNVEPDL 528
              PR  +    + +K    +   +  P L
Sbjct: 80  FATPRKRSEVDTDQNKAVKKTIRQDNRPRL 109


>SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein
           Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 348

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = -2

Query: 734 SRLVRPGTAEVIYKTQEDAQRAVDLYHNRQLD 639
           +RLV  G A V +  QED  +A++  + + LD
Sbjct: 84  TRLVPSGIAFVTFNNQEDVDKAIETLNGKTLD 115


>SPBC8D2.15 |||mitochondrial lipoic acid synthetase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 370

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = -1

Query: 681 CTEGCRFISQSTARR 637
           CT GCRF S  T+RR
Sbjct: 131 CTRGCRFCSVKTSRR 145


>SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 489

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = -1

Query: 744 HGRIAFGSTRYCRSNL*NSRRCTEGCRFISQ 652
           H R ++G+T+YC S L N +     C ++ +
Sbjct: 194 HLRASYGTTKYCTSYLRNQQCPNPSCMYLHE 224


>SPBC2D10.04 |||arrestin Aly1 related|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 658

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 10/29 (34%), Positives = 19/29 (65%)
 Frame = +3

Query: 396 VTFPFL*IEA*NLLQITITLYKIYYYWCR 482
           +TF FL ++   L +++I++ +   YWCR
Sbjct: 368 ITFRFLLLDKVRLYKLSISVVESSEYWCR 396


>SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 137

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 4/44 (9%)
 Frame = -2

Query: 782 AGDIEELFGDVGGMVESRLVRP----GTAEVIYKTQEDAQRAVD 663
           A ++ +LFG  G + + RL       GTA V+Y+  +DA+RA +
Sbjct: 25  AEEMYDLFGRYGPVRQIRLGNTVQTRGTAFVVYENVQDARRACE 68


>SPAC4D7.02c |||glycerophosphoryl diester phosphodiesterase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 319

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 11/27 (40%), Positives = 19/27 (70%)
 Frame = -2

Query: 653 NRQLDGQPMNCLLVVPRTLNSSSRNNS 573
           N  +D +P+N LL++PR +++  R NS
Sbjct: 140 NLLVDIKPVNDLLIIPRMVDAMLRVNS 166


>SPAC22G7.05 |||krr family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 598

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -1

Query: 435 EGFTLLSKEKEK*QITQSIHLYERIL 358
           +G  L+ KEK K Q+ +  H YER L
Sbjct: 228 DGDFLVKKEKTKKQLEEEEHGYERFL 253


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,979,257
Number of Sequences: 5004
Number of extensions: 58091
Number of successful extensions: 153
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 379359666
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)